RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1982

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

27392372

End:

27393505

Strand:

.

Ref_name:

OSA-LNCN1982

Sequence
(OSA-LNCN1982.1):

CCCCAAAAUCCCAAAUCAAUCAUCCUCAAAUUGCCUCCAAAUCCACAAAUCGAUCAUCUCAAAUACUCAAAUACAUCACAAAAUCUUAAAAAAAAAUUACAUCACAACUUCUACAAAAUUCAUCACAUAUUCACAUCACACACAAAUCAAAUACAUCACACAACAAUCUCAGAUCCAAUCAAAUACAUUCCCACAACAAUCUCAGAUUCUGCAAAAAAAAGAAAAAGAAAAAAAAAGGAGAAGACGCGCGGCGAGGCACCGCCGCCGCGCCGGCCGGCCGGCCGGCCCUCCGCGCCCCGCCGCCGCGCGGCCGCCCACCACCGCCGCGCCGGCCGGCCGGCCGGCCCUCCCUCCGUGCCCCGCCGCCAGCUGCCGCCGCACCGCCGUGCGGCCACCACCGCGCCGCCGUGCCGGCUAGCUGGCCCACCGUGCCCCGCCGCCGCGCCGGCCGGCCGGCCCUCCGCGCCCCGCCGCCGCGCGGCCGCCCACCACCGCCGCGCCGGCCGGCCGGCCGACCCUCCCUCCGCGCCCAGCCGCCAGCUGCCGCCGCACCGCCGUGCGGCCACCACCGCGCCGCCGUGCCGGCUAGCUGGCCCUCCGCGCCCCGCCAGCCACCGCCUCACCGCGCACCGCGCCGGCCAGCCGGCCCUCCGCGACCCGCUGCCCUCGCGCCGGCUUGGCAGUGGAGAGGAGAAGGAGAGGAGAAGAAGAGGAGAGGAAUAGAGAUAAGAAUGAGAAGAGGAGAUAAGGUUGAAGAGAUGAGUUAAAAAUGAGAGGAGGAGAUAAGGUUAAGGAGGAGAGAGGAGUUAAAGGAGAGGAGGUCCGAUCGUGCACACACGAUUUUUACUCCCGGUUGGUUUUACCAACCGGGACUAUAAAUAGAUCUUUAGUCCCGGUUGGUAACACCAACCGGGAGUAAAACGUAUGGCGAUCUUUUUUCCCGGUUGAUGUUAUCAACCGGGACUACAAAUAGAUCUUUAGUCUCGGUUGGUAACACCAACCGGUACUAAAGAUUGAAAAGUAUCCUGUAACUUUUAAACCGGGACUAAAGAUAUUUUUAGUCCCGGUUUUUAAUACAACCGGGACUAUUGUAAAAUCUGGUUGACCGACCAAAGAUGGUUUCUCCACCAGUGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

441

LEP:

89.63%

ME_num:

38

MEP:

7.72%

HE_num:

12

HEP:

2.44%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.95

Avg Expression:

4.84

Tip: OSA-LNCN1982 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h9.367630517432343.72088796315747e-19
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h9.122537464036469.579203083831e-11
3BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs3.823025560674912.43827479165663e-08