Chr:
Chr11
Start:
24999108
End:
24999502
Strand:
+
Ref_name:
OSA-LNCN1920
Sequence
(OSA-LNCN1920.1):
GCCUGUCUUCGAGAAUUGUAGGAAUUGCUCUCCCGUCCAUCCGGUAGAAUUUGGAGAGGGAAGAAAUUGCUCCUGUACAUGACAUGCACGAGGCAAUAUGUGACUCAUCCGGCAUGAAUAUAAAUAUGUAUAAAUCAUGGUUGGUCUGAUGCCAAUAAGACUCAAACUCAUCCCAAGUUUAUAUAAAUAAAUAUCCACAUCCAAUAUUUGAUAUUGAUAAUUUAGACGGUCCAACCCUCACGAAGGUUAGGCUCGCCUUGUAUUUAUUUGUAGCUCAUAUUAAUCGCUUGACAAAGAUAACGUGUGCGUGUGCAUGCGCCGCUGGGGAUAUUUAUAUCCAUGGCUACAAGUUCACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.85%
ME_num:
MEP:
21.34%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -6.03984299407629 | 3.20089886428948e-05 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.51871724546616 | 0.0283843774820016 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -6.24387720599057 | 5.12417289234987e-05 |