Chr:
Chr11
Start:
24650639
End:
24651926
Strand:
-
Ref_name:
OSA-LNCN1896
Sequence
(OSA-LNCN1896.1):
CAGUUUUUUUUUUUUCAUAUAAACUAAAGAAAAACUCUGCUCUUGUGAACACAAAUGGUAACCAUUAACCCCUUCACUAGCUAAUGUAUCUAUCUGGUACAAUCCACCUUGACACAGCACGCCUAUUUUCAAGUUUUGCUGAAUUGGGCAGCCAAAAGUUCAUUCAAGAGCAAGCCAAAAUUCAGCUAGGAACAUCUUUGACUGUACCAAACAAUCACCACUGUUACAUUGGGUCACAGAUAGCACAACUGGAGCUGGAAAUACGGCAUGCUAUUGUCAGAGAUGAAAGCCCGGUACAAUUUUAAUAGCAUGAAACAUGAUCACGGUGCCAAACAAGCGUUGCGAGAAAAGAGGAUUCCCCAUAAUCAUCGAACUUCAUAUGAUUAUAUCAACACAGGCCAUCAUCAAUUUACAGCUUUUUCAGGUGGCACUAUCACCGGACAAUCAAAGGCGCCUCCGAGACAUAGCAACGCAGGCACACAAAGAAACCAUGGGGAAGCAAACUUCCCCUACUGACUAUUUCAAAGAAAUAGAAAAGAAUGUUUUUGUGCGCCCUUCCAACAUUUCAAGAAUAUCAGAGGCGAUGAGGAUCACACUACUGAUUCAAUACUUACAAGGUGUAUGUACAGAGUAUUUGGUGGCCUAGACCACCUGUACUUUCAGAUUGCCAUGAGGGUUGUUAAUCCAAGAAAUACAGGCCAGUCUGACAAUUAUGUUGUCUCGUCAAACUCCAUUUUCUGCGGAGGAUUAGAAGAAAGCAAAACAUCAAUCAAGAGUUAGAAGGAAAACAUCGUUUGGAAAGGAGAAACAAAAUAGAUUCCGACAGCUGUCAGCUAUAAAGAUACAUCAGUUGGAGGUUACCACUGCAUAAAAACUGAGUUAAAAAAGGUCAGCUUCACACAUUUUUAUUUAAGGUUAAUACUGCCAAAACUGCUUUACUUUUUCUUUAAUUCAAAUAGUCAGCAUCUCAAUUAGGUAAGUGUUCUUCCCCCAAAACAAUUCAUUUCUUAUAUUUGUCGGUCCAAAGUAGAUGUGAUUCCCUUUCCAAGCUAAAUUAUUAUCUAUGUGAUAAGUCACCUAUCCUCCUACCUUAAGGGGCUUUACAGUCACCAUAUCCUUAUGUAAGGCAAAGUGGAUACUGCAGUAAUCAGCCUAAACCAUGCAUUGGUUAAGGGUGCCAAAAAAAAGAUCUUCUGAAAAAAAUCUACGAGAUAGAUGGGCAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.91%
ME_num:
MEP:
63.01%
HE_num:
HEP:
29.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.57
Avg Expression:
6.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.03929885748773 | 0.000220358542670115 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.27730951158127 | 0.041989783113246 |
| 3 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.04054526908331 | 0.0401324294591191 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.09518760392809 | 0.000753376192607781 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.13976180164167 | 0.0452934901600505 |