Chr:
Chr11
Start:
24570266
End:
24571152
Strand:
-
Ref_name:
OSA-LNCN1895
Sequence
(OSA-LNCN1895.1):
GGGAUCUAUGCAAAUAGAACUACACAUUUGCUAUGGACUGAAAAACACAAAACUAUUCAAUUUUGCCCUUCCAUGGUACAUGUAUGUAUAUGGAUCUGCAACCGACACUACUGGAGAAACCAUAUUUCCCCAGUCGAUAAAAAACAAAUAGUCCAGAUCAAGGAGCGAGAGGCUGGCGCACGGCGGCGGCGCCCUGCGCGUGCCAGAGCAGGUUGGAUUGGCGGCGGAAGAUGCGGCGGCUGCCUCUGGCCGUGGUUGGUGGCAGUCGGGCUGGGGAGGCGGCGGCGGUAGGCAGCGGCCGGCGGGGCCGCGCGAUCCCGGCGGCGACCAGCGGGGCCAGUAUGGAGGGGCCGGCCAAUGGAGCCGGUGCGGAGGGGCCGGCACGCGGGCGUUUUUCCCUUUUUUUUUCUUUUUUCCUUGUUAAUCUGUGAAUGAUUGUUUGUUGAGAAGAGUUGUGAUGAUUGUUUGUUGAGAAUGAUUGUUUGUUGAGAAUGAUUUUUUCAUUCGAUCUAUGAUUUGAAGAUGAGAAUGUUGUUGUGAUUUGAGAAUAAAUGUUCAUCUUUAGUCCCGGAUUCGUAGUCAGGAGGUUCCCAAGCGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.84%
ME_num:
MEP:
9.76%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
0.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.64558841994007 | 0.0275971659264315 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.84661833741176 | 0.00334317882429583 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.58104363558698 | 0.0032205264488913 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.19346304484729 | 0.0216861875621841 |