Chr:
Chr11
Start:
24017788
End:
24020769
Strand:
+
Ref_name:
OSA-LNCN1873
Sequence
(OSA-LNCN1873.1):
CUCCUCUCCUUUUUCCACCUUUGCCCGACACCGCCGGCGUCAUCACCUGCCGCCUCCUUGGCCGCACGCGUCGACCGCCAGCUUGCCGCCCUUGCAUCCUUGACAGCGCACGAGGUCGGUUUCCUCCCUCCACAAACAGACAUUCCUCCACUAUAAAACCCAAGCCGCCCCAAACCCCUUCCUCUCUCGUUUUCACUCGCCUCGCACCCACCGCGCCAUUGCCGCCGAACCACCGUCGCCGCCUUGUUGCCGCUCGACCCGAUCUCGCCGUCGCCGUCCGCCGCCGAGCAUCGGAGGAACCGGUGCGUGCGUGGGCGCGUGACGAGGAGCUCCGGGCGCCACCUCUCCCCUCUUGUUCCCCGGCCGCGCCCUCUCGGUGUCGUGCCGCCCCGCCGUCGCGACUGCCUCGCCGCGACGCCAUCCGUCUGCCGACGCCGUUCCCGCUCGUCGGUUUUGAUUGUUUGCGUAUAGUUGCGGUUACCGGAUUUUUGUCGAUCGUGGGAUUUCUCGAAGAUUCGUGAAGCUUCGUGAAGAUCUUGAGCAAGUGUUGGCGGUAUGGCAUGAGGCCCUUCGACCAAACCUGCUGAAACCAUGCGAAGAGUGGGGAUUCAAGCCCGAGACGUCAAAGUUAGUCAGGGCGAAGUCCCCCCAUGGCGAAGACUAUGGAACAGGGACGGCGAGAGGUGAGGGAUCACGUGGGUGCUUUGCCAAGCCAAAGGCCUCUUGGGCGAAGGAUGCAGGGCGAAGAAUAUAUGCCGAAGGGAGACGACUUCGCCAUAGCAAGUUCUCCCCCGCGAGGACCGAAGAAGCUUUUCCGGCCCAUCAAGCCUAGGGGCUAUUGGGCCGACGAUUGCCCAACGGCCAUCAGGGGCCCAUGAACCUCAAUUACACUAUGUACCCAUGUAAAUGUCCCUUUCUAAGGGCAACCAUGUAAAUUCCCCUGUAUAACCAAAACCAUAGUAGUAAGAAUCUGUAAUGGGGGCUAUAAAUAGUCUCAUAGGGCCAUGUAAUAGGGGGAUCCGAAGAAAAAUUCUCAAAUUAAUACAUUUUACUUCUUUUCCAACCACUGUUGGGUGACCACGUCUUUGACGUAUGCGGUUGUCGUUUCGACAACAGCUGGCGCCGACCGUGGGGACCUCCGAGCGAAACCACUGAGAGCGAAUGCCACCGAAGAAGGUUGUGAAGGAGAAGGUUACGAGGCGAAAGGAAAGCGACGCCGGGACGGAUAUGGCCGCCGAAGAGGGAGCAGAGCCUUCGGCGCCUGUCGCCGAAGAUGGAGGAGCGCCAUCUGCUUCCGCACCUGCGCCAUCACUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.16%
ME_num:
MEP:
13.62%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.89
Avg Expression:
1.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.1576005365346 | 0.0093822221134918 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.86193408408543 | 0.0360267094218179 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.05676399079187 | 0.00685448631171948 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.00692279014573 | 0.011595146001365 |