Chr:
Chr11
Start:
24052578
End:
24060567
Strand:
-
Ref_name:
OSA-LNCN1872
Sequence
(OSA-LNCN1872.1):
CCCCUUCUUUCGAUUGGUAGAAUUUAACGGCCCUAUCCUUAAAAUUGAAGCUGAUUUUGAUGUUUUUUCAUCAAAAUUUAUUUUUCAACCUUUACUUUUAGGUCGCUAAGAACAAUUAUAUAAAAAUUUUAUUCACAAAUUACUUCUCGUUUAUAAAUGUGCUGGGCCGUGAGUUUUUUUUUACACCUAGGAGACCACGUGGGCCCCCCCACCUCCUCCCCGCGUUCUUCGCUGGCCAUGUGGGCCCCAACGAAGACUUCCUCGCCCUCCCCGUACCUCGUACAGAACCGGCCACUGUGGCAGGCGUCAUCGCGUCGGCCUCAUGCAUGCCGACGCUGCCCAUCCAGUAGUCGCUUGCCACCUCGCCUUUUUUUCCCGUCGUCCGUGCCGCGCCAAGUCGCCAACACCGAUGCACCCGGUGCACCGCCUUGCCUUCUCGCGCUCCAACUCCCGCGGUCGACAGUCCACGCCGAAAGUGUGAGCCGAGCUCACCCACGCCGCGUCGCCACUGUCGCGUCGCCUCGCCUCCCCUGUGCCGCCAUGCCUCCUUCCAUCCCCUCGAAGCCACCGCGUCGCCAUUCGCCAUGGCUAUAGAAGCCACCUCGCUCCACCAUCCUCCAUCUUUCGCCAUUCCCAUCGCCACUACCGUCUUCGCUCUCCCCUAGUCGGCCCGAGGCGCGCGGUCGGGCACUUCGAAGCCGCACGCCGGACCCGCGCACCGCUCGGCCGCUUCACCGCCAGCACCUCCAUCGCCGCCUCUGCUCCACCUUCCCGAGCCAGCUCGCCACCAGUGCCGCCAUCACUCACCCCGCCAUGCCACCGCCUUCUGGCUAAUUCUCUCGCCGCCAUCACCCUCUUCGCCGUCGGCCAGGGUGCCGCCGCGCUCGGCCAAGCCGGCCCCCGCGCGAGCGCCGCCCUACGGCCGAUUGCUCGCCCGUCGCCCUGAACCCCGGCGCUCCAUCGGCGGAGCUUCCCCAGCCGCCUCCGCCUCCGCUUGGCCGGAGAGCCACCGAAGCCGCCGCCGCCGCCGCCGUCUUCAUCUUGCUCCGGGCCGCCGUCGCGCCGCGUCGGGAGACGCCCGCUUGCGCACCUCCCCUCGGACGACACCCGCCGGGCCUCUCCGUCUCCUCACUCCGGCUCCUCCGUCCAGCCGCCCUCCGCCGCCGCCCCGAGCCACGCCUCGCUCUCUUCCGCUCGGGCGCGCGCGCGUGGAGAAAGAAAAGCGGAUCGGGUAAAGAACGAGAAGAGGAGAAAUCGAGGAGGAGGGGGAGAGAAAGAAAGGAAAAGAGGAGAUGCGACACUGACAGGUGGGACCAUCGAGGGCUUAAUGAUUCCUUAAUUAAUCCUACACAGUAAUCAUCGCCAUCUUAAUCCGCUUCUACUGUCUCAAUGACAUGUGGGCCCGGUUGUACUUAAUCUCUAACUAAACUCCCUUUUAACUCUUGAGUCACUUACAUGUGGGACCACGAUUCCUUAACCAUUUGCGCACCCGGUCCACAUGCAGACAUGCUCCUUGUCACUGACCCUUGGGCCCCACACGCACUGACCAUGGACCGUGAGCCGGUCCACCACCUCACCUCACGGUCUACCGUGCGCCGACCCCCCGGUGCCACUGUGAGUGGGCCCACAAAGGAAUAUUCCUUCGGAAUAUUUUUUCCCCAUGAAAGAAACUCUUUUUCCUUUGCUCAAAAAUUUAUUUAAUCUUUAAAAUUUCAUAUCUUGCAAAUCGUAACUCUGUUCGACUCCGUUCAAUUUCCAUAAUUUUUCUAAAAUUGAGAUCUGUCCAACGGCACAAUUAGUUUAUAAUAGUUAUUAUCUACUUUAUAGGGUUUUGAAUGGUUCUCUCUUUUCAAGUGCGUAGUGGAUGUUUUGGGGUUCAAUGGAUGCGGAUUCUCUCGAAGAUUUGAAGAUCAUGAACUAAGGGGAUGCGAAGCUUGUCAAUGGUUCGGCACUGUUCAAUCGGCACUUGCCGUUGUAUUGAAUCCUAUCAUCAAACCAUGGCCGUUCCGAGGUUAGGCUUUGGAUUUCGUGCUAGUCGCAACGGAUUAUUUCACUAAGUGGGCCGAAGCCGUG
Sequence
(OSA-LNCN1872.2):
CCCCUUCUUUCGAUUGGUAGAAUUUAACGGCCCUAUCCUUAAAAUUGAAGCUGAUUUUGAUGUUUUUUCAUCAAAAUUUAUUUUUCAACCUUUACUUUUAGGUCGCUAAGAACAAUUAUAUAAAAAUUUUAUUCACAAAUUACUUCUCGUUUAUAAAUGUGCUGGGCCGUGAGUUUUUUUUUACACCUAGGAGACCACGUGGGCCCCCCCACCUCCUCCCCGCGUUCUUCGCUGGCCAUGUGGGCCCCAACGAAGACUUCCUCGCCCUCCCCGUACCUCGUACAGAACCGGCCACUGUGGCAGGCGUCAUCGCGUCGGCCUCAUGCAUGCCGACGCUGCCCAUCCAGUAGUCGCUUGCCACCUCGCCUUUUUUUCCCGUCGUCCGUGCCGCGCCAAGUCGCCAACACCGAUGCACCCGGUGCACCGCCUUGCCUUCUCGCGCUCCAACUCCCGCGGUCGACAGUCCACGCCGAAAGUGUGAGCCGAGCUCACCCACGCCGCGUCGCCACUGUCGCGUCGCCUCGCCUCCCCUGUGCCGCCAUGCCUCCUUCCAUCCCCUCGAAGCCACCGCGUCGCCAUUCGCCAUGGCUAUAGAAGCCACCUCGCUCCACCAUCCUCCAUCUUUCGCCAUUCCCAUCGCCACUACCGUCUUCGCUCUCCCCUAGUCGGCCCGAGGCGCGCGGUCGGGCACUUCGAAGCCGCACGCCGGACCCGCGCACCGCUCGGCCGCUUCACCGCCAGCACCUCCAUCGCCGCCUCUGCUCCACCUUCCCGAGCCAGCUCGCCACCAGUGCCGCCAUCACUCACCCCGCCAUGCCACCGCCUUCUGGCUAAUUCUCUCGCCGCCAUCACCCUCUUCGCCGUCGGCCAGGGUGCCGCCGCGCUCGGCCAAGCCGGCCCCCGCGCGAGCGCCGCCCUACGGCCGAUUGCUCGCCCGUCGCCCUGAACCCCGGCGCUCCAUCGGCGGAGCUUCCCCAGCCGCCUCCGCCUCCGCUUGGCCGGAGAGCCACCGAAGCCGCCGCCGCCGCCGCCGUCUUCAUCUUGCUCCGGGCCGCCGUCGCGCCGCGUCGGGAGACGCCCGCUUGCGCACCUCCCCUCGGACGACACCCGCCGGGCCUCUCCGUCUCCUCACUCCGGCUCCUCCGUCCAGCCGCCCUCCGCCGCCGCCCCGAGCCACGCCUCGCUCUCUUCCGCUCGGGCGCGCGCGCGUGGAGAAAGAAAAGCGGAUCGGGUAAAGAACGAGAAGAGGAGAAAUCGAGGAGGAGGGGGAGAGAAAGAAAGGAAAAGAGGAGAUGCGACACUGACAGGUGGGACCAUCGAGGGCUUAAUGAUUCCUUAAUUAAUCCUACACAGUAAUCAUCGCCAUCUUAAUCCGCUUCUACUGUCUCAAUGACAUGUGGGCCCGGUUGUACUUAAUCUCUAACUAAACUCCCUUUUAACUCUUGAGUCACUUACAUGUGGGACCACGAUUCCUUAACCAUUUGCGCACCCGGUCCACAUGCAGACAUGCUCCUUGUCACUGACCCUUGGGCCCCACACGCACUGACCAUGGACCGUGAGCCGGUCCACCACCUCACCUCACGGUCUACCGUGCGCCGACCCCCCGGUGCCACUGGUUUUGAAUGGUUCUCUCUUUUCAAGUGCGUAGUGGAUGUUUUGGGGUUCAAUGGAUGCGGAUUCUCUCGAAGAUUUGAAGAUCAUGAACUAAGGCAAGCCACUCUUCAAUCAUAUUGUCCCUAGUUUAUAAUAUGUGUUGAUUACAAAUUGCAUGAUUGGUGUACAUCUUUUUGUAAGCAGCCUCACUCUAUGAA
Sequence
(OSA-LNCN1872.3):
CCCCUUCUUUCGAUUGGUAGAAUUUAACGGCCCUAUCCUUAAAAUUGAAGCUGAUUUUGAUGUUUUUUCAUCAAAAUUUAUUUUUCAACCUUUACUUUUAGGUCGCUAAGAACAAUUAUAUAAAAAUUUUAUUCACAAAUUACUUCUCGUUUAUAAAUGUGCUGGGCCGUGAGUUUUUUUUUACACCUAGGAGACCACGUGGGCCCCCCCACCUCCUCCCCGCGUUCUUCGCUGGCCAUGUGGGCCCCAACGAAGACUUCCUCGCCCUCCCCGUACCUCGUACAGAACCGGCCACUGUGGCAGGCGUCAUCGCGUCGGCCUCAUGCAUGCCGACGCUGCCCAUCCAGUAGUCGCUUGCCACCUCGCCUUUUUUUCCCGUCGUCCGUGCCGCGCCAAGUCGCCAACACCGAUGCACCCGGUGCACCGCCUUGCCUUCUCGCGCUCCAACUCCCGCGGUCGACAGUCCACGCCGAAAGUGUGAGCCGAGCUCACCCACGCCGCGUCGCCACUGUCGCGUCGCCUCGCCUCCCCUGUGCCGCCAUGCCUCCUUCCAUCCCCUCGAAGCCACCGCGUCGCCAUUCGCCAUGGCUAUAGAAGCCACCUCGCUCCACCAUCCUCCAUCUUUCGCCAUUCCCAUCGCCACUACCGUCUUCGCUCUCCCCUAGUCGGCCCGAGGCGCGCGGUCGGGCACUUCGAAGCCGCACGCCGGACCCGCGCACCGCUCGGCCGCUUCACCGCCAGCACCUCCAUCGCCGCCUCUGCUCCACCUUCCCGAGCCAGCUCGCCACCAGUGCCGCCAUCACUCACCCCGCCAUGCCACCGCCUUCUGGCUAAUUCUCUCGCCGCCAUCACCCUCUUCGCCGUCGGCCAGGGUGCCGCCGCGCUCGGCCAAGCCGGCCCCCGCGCGAGCGCCGCCCUACGGCCGAUUGCUCGCCCGUCGCCCUGAACCCCGGCGCUCCAUCGGCGGAGCUUCCCCAGCCGCCUCCGCCUCCGCUUGGCCGGAGAGCCACCGAAGCCGCCGCCGCCGCCGCCGUCUUCAUCUUGCUCCGGGCCGCCGUCGCGCCGCGUCGGGAGACGCCCGCUUGCGCACCUCCCCUCGGACGACACCCGCCGGGCCUCUCCGUCUCCUCACUCCGGCUCCUCCGUCCAGCCGCCCUCCGCCGCCGCCCCGAGCCACGCCUCGCUCUCUUCCGCUCGGGCGCGCGCGCGUGGAGAAAGAAAAGCGGAUCGGGUAAAGAACGAGAAGAGGAGAAAUCGAGGAGGAGGGGGAGAGAAAGAAAGGAAAAGAGGAGAUGCGACACUGACAGACAUGCUCCUUGUCACUGACCCUUGGGCCCCACACGCACUGACCAUGGACCGUGAGCCGGUCCACCACCUCACCUCACGGUCUACCGUGCGCCGACCCCCCGGUGCCACUUGCGUAGUGGAUGUUUUGGGGUUCAAUGGAUGCGGAUUCUCUCGAAGAUUUGAAGAUCAUGAACUAAGGCAAGCCACUCUUCAAUCAUAUUGUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.97%
ME_num:
MEP:
24.8%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.89
Avg Expression:
5.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.12870217543141 | 0.00125864619755156 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.12180493769967 | 3.12408977211813e-06 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.97715573051533 | 0.00847059992012725 |