OSA-LNCN1872


Function Link


Basic Info

Chr:

Chr11

Start:

24052578

End:

24060567

Strand:

-

Ref_name:

OSA-LNCN1872

Sequence
(OSA-LNCN1872.1):

CCCCUUCUUUCGAUUGGUAGAAUUUAACGGCCCUAUCCUUAAAAUUGAAGCUGAUUUUGAUGUUUUUUCAUCAAAAUUUAUUUUUCAACCUUUACUUUUAGGUCGCUAAGAACAAUUAUAUAAAAAUUUUAUUCACAAAUUACUUCUCGUUUAUAAAUGUGCUGGGCCGUGAGUUUUUUUUUACACCUAGGAGACCACGUGGGCCCCCCCACCUCCUCCCCGCGUUCUUCGCUGGCCAUGUGGGCCCCAACGAAGACUUCCUCGCCCUCCCCGUACCUCGUACAGAACCGGCCACUGUGGCAGGCGUCAUCGCGUCGGCCUCAUGCAUGCCGACGCUGCCCAUCCAGUAGUCGCUUGCCACCUCGCCUUUUUUUCCCGUCGUCCGUGCCGCGCCAAGUCGCCAACACCGAUGCACCCGGUGCACCGCCUUGCCUUCUCGCGCUCCAACUCCCGCGGUCGACAGUCCACGCCGAAAGUGUGAGCCGAGCUCACCCACGCCGCGUCGCCACUGUCGCGUCGCCUCGCCUCCCCUGUGCCGCCAUGCCUCCUUCCAUCCCCUCGAAGCCACCGCGUCGCCAUUCGCCAUGGCUAUAGAAGCCACCUCGCUCCACCAUCCUCCAUCUUUCGCCAUUCCCAUCGCCACUACCGUCUUCGCUCUCCCCUAGUCGGCCCGAGGCGCGCGGUCGGGCACUUCGAAGCCGCACGCCGGACCCGCGCACCGCUCGGCCGCUUCACCGCCAGCACCUCCAUCGCCGCCUCUGCUCCACCUUCCCGAGCCAGCUCGCCACCAGUGCCGCCAUCACUCACCCCGCCAUGCCACCGCCUUCUGGCUAAUUCUCUCGCCGCCAUCACCCUCUUCGCCGUCGGCCAGGGUGCCGCCGCGCUCGGCCAAGCCGGCCCCCGCGCGAGCGCCGCCCUACGGCCGAUUGCUCGCCCGUCGCCCUGAACCCCGGCGCUCCAUCGGCGGAGCUUCCCCAGCCGCCUCCGCCUCCGCUUGGCCGGAGAGCCACCGAAGCCGCCGCCGCCGCCGCCGUCUUCAUCUUGCUCCGGGCCGCCGUCGCGCCGCGUCGGGAGACGCCCGCUUGCGCACCUCCCCUCGGACGACACCCGCCGGGCCUCUCCGUCUCCUCACUCCGGCUCCUCCGUCCAGCCGCCCUCCGCCGCCGCCCCGAGCCACGCCUCGCUCUCUUCCGCUCGGGCGCGCGCGCGUGGAGAAAGAAAAGCGGAUCGGGUAAAGAACGAGAAGAGGAGAAAUCGAGGAGGAGGGGGAGAGAAAGAAAGGAAAAGAGGAGAUGCGACACUGACAGGUGGGACCAUCGAGGGCUUAAUGAUUCCUUAAUUAAUCCUACACAGUAAUCAUCGCCAUCUUAAUCCGCUUCUACUGUCUCAAUGACAUGUGGGCCCGGUUGUACUUAAUCUCUAACUAAACUCCCUUUUAACUCUUGAGUCACUUACAUGUGGGACCACGAUUCCUUAACCAUUUGCGCACCCGGUCCACAUGCAGACAUGCUCCUUGUCACUGACCCUUGGGCCCCACACGCACUGACCAUGGACCGUGAGCCGGUCCACCACCUCACCUCACGGUCUACCGUGCGCCGACCCCCCGGUGCCACUGUGAGUGGGCCCACAAAGGAAUAUUCCUUCGGAAUAUUUUUUCCCCAUGAAAGAAACUCUUUUUCCUUUGCUCAAAAAUUUAUUUAAUCUUUAAAAUUUCAUAUCUUGCAAAUCGUAACUCUGUUCGACUCCGUUCAAUUUCCAUAAUUUUUCUAAAAUUGAGAUCUGUCCAACGGCACAAUUAGUUUAUAAUAGUUAUUAUCUACUUUAUAGGGUUUUGAAUGGUUCUCUCUUUUCAAGUGCGUAGUGGAUGUUUUGGGGUUCAAUGGAUGCGGAUUCUCUCGAAGAUUUGAAGAUCAUGAACUAAGGGGAUGCGAAGCUUGUCAAUGGUUCGGCACUGUUCAAUCGGCACUUGCCGUUGUAUUGAAUCCUAUCAUCAAACCAUGGCCGUUCCGAGGUUAGGCUUUGGAUUUCGUGCUAGUCGCAACGGAUUAUUUCACUAAGUGGGCCGAAGCCGUG

Sequence
(OSA-LNCN1872.2):

CCCCUUCUUUCGAUUGGUAGAAUUUAACGGCCCUAUCCUUAAAAUUGAAGCUGAUUUUGAUGUUUUUUCAUCAAAAUUUAUUUUUCAACCUUUACUUUUAGGUCGCUAAGAACAAUUAUAUAAAAAUUUUAUUCACAAAUUACUUCUCGUUUAUAAAUGUGCUGGGCCGUGAGUUUUUUUUUACACCUAGGAGACCACGUGGGCCCCCCCACCUCCUCCCCGCGUUCUUCGCUGGCCAUGUGGGCCCCAACGAAGACUUCCUCGCCCUCCCCGUACCUCGUACAGAACCGGCCACUGUGGCAGGCGUCAUCGCGUCGGCCUCAUGCAUGCCGACGCUGCCCAUCCAGUAGUCGCUUGCCACCUCGCCUUUUUUUCCCGUCGUCCGUGCCGCGCCAAGUCGCCAACACCGAUGCACCCGGUGCACCGCCUUGCCUUCUCGCGCUCCAACUCCCGCGGUCGACAGUCCACGCCGAAAGUGUGAGCCGAGCUCACCCACGCCGCGUCGCCACUGUCGCGUCGCCUCGCCUCCCCUGUGCCGCCAUGCCUCCUUCCAUCCCCUCGAAGCCACCGCGUCGCCAUUCGCCAUGGCUAUAGAAGCCACCUCGCUCCACCAUCCUCCAUCUUUCGCCAUUCCCAUCGCCACUACCGUCUUCGCUCUCCCCUAGUCGGCCCGAGGCGCGCGGUCGGGCACUUCGAAGCCGCACGCCGGACCCGCGCACCGCUCGGCCGCUUCACCGCCAGCACCUCCAUCGCCGCCUCUGCUCCACCUUCCCGAGCCAGCUCGCCACCAGUGCCGCCAUCACUCACCCCGCCAUGCCACCGCCUUCUGGCUAAUUCUCUCGCCGCCAUCACCCUCUUCGCCGUCGGCCAGGGUGCCGCCGCGCUCGGCCAAGCCGGCCCCCGCGCGAGCGCCGCCCUACGGCCGAUUGCUCGCCCGUCGCCCUGAACCCCGGCGCUCCAUCGGCGGAGCUUCCCCAGCCGCCUCCGCCUCCGCUUGGCCGGAGAGCCACCGAAGCCGCCGCCGCCGCCGCCGUCUUCAUCUUGCUCCGGGCCGCCGUCGCGCCGCGUCGGGAGACGCCCGCUUGCGCACCUCCCCUCGGACGACACCCGCCGGGCCUCUCCGUCUCCUCACUCCGGCUCCUCCGUCCAGCCGCCCUCCGCCGCCGCCCCGAGCCACGCCUCGCUCUCUUCCGCUCGGGCGCGCGCGCGUGGAGAAAGAAAAGCGGAUCGGGUAAAGAACGAGAAGAGGAGAAAUCGAGGAGGAGGGGGAGAGAAAGAAAGGAAAAGAGGAGAUGCGACACUGACAGGUGGGACCAUCGAGGGCUUAAUGAUUCCUUAAUUAAUCCUACACAGUAAUCAUCGCCAUCUUAAUCCGCUUCUACUGUCUCAAUGACAUGUGGGCCCGGUUGUACUUAAUCUCUAACUAAACUCCCUUUUAACUCUUGAGUCACUUACAUGUGGGACCACGAUUCCUUAACCAUUUGCGCACCCGGUCCACAUGCAGACAUGCUCCUUGUCACUGACCCUUGGGCCCCACACGCACUGACCAUGGACCGUGAGCCGGUCCACCACCUCACCUCACGGUCUACCGUGCGCCGACCCCCCGGUGCCACUGGUUUUGAAUGGUUCUCUCUUUUCAAGUGCGUAGUGGAUGUUUUGGGGUUCAAUGGAUGCGGAUUCUCUCGAAGAUUUGAAGAUCAUGAACUAAGGCAAGCCACUCUUCAAUCAUAUUGUCCCUAGUUUAUAAUAUGUGUUGAUUACAAAUUGCAUGAUUGGUGUACAUCUUUUUGUAAGCAGCCUCACUCUAUGAA

Sequence
(OSA-LNCN1872.3):

CCCCUUCUUUCGAUUGGUAGAAUUUAACGGCCCUAUCCUUAAAAUUGAAGCUGAUUUUGAUGUUUUUUCAUCAAAAUUUAUUUUUCAACCUUUACUUUUAGGUCGCUAAGAACAAUUAUAUAAAAAUUUUAUUCACAAAUUACUUCUCGUUUAUAAAUGUGCUGGGCCGUGAGUUUUUUUUUACACCUAGGAGACCACGUGGGCCCCCCCACCUCCUCCCCGCGUUCUUCGCUGGCCAUGUGGGCCCCAACGAAGACUUCCUCGCCCUCCCCGUACCUCGUACAGAACCGGCCACUGUGGCAGGCGUCAUCGCGUCGGCCUCAUGCAUGCCGACGCUGCCCAUCCAGUAGUCGCUUGCCACCUCGCCUUUUUUUCCCGUCGUCCGUGCCGCGCCAAGUCGCCAACACCGAUGCACCCGGUGCACCGCCUUGCCUUCUCGCGCUCCAACUCCCGCGGUCGACAGUCCACGCCGAAAGUGUGAGCCGAGCUCACCCACGCCGCGUCGCCACUGUCGCGUCGCCUCGCCUCCCCUGUGCCGCCAUGCCUCCUUCCAUCCCCUCGAAGCCACCGCGUCGCCAUUCGCCAUGGCUAUAGAAGCCACCUCGCUCCACCAUCCUCCAUCUUUCGCCAUUCCCAUCGCCACUACCGUCUUCGCUCUCCCCUAGUCGGCCCGAGGCGCGCGGUCGGGCACUUCGAAGCCGCACGCCGGACCCGCGCACCGCUCGGCCGCUUCACCGCCAGCACCUCCAUCGCCGCCUCUGCUCCACCUUCCCGAGCCAGCUCGCCACCAGUGCCGCCAUCACUCACCCCGCCAUGCCACCGCCUUCUGGCUAAUUCUCUCGCCGCCAUCACCCUCUUCGCCGUCGGCCAGGGUGCCGCCGCGCUCGGCCAAGCCGGCCCCCGCGCGAGCGCCGCCCUACGGCCGAUUGCUCGCCCGUCGCCCUGAACCCCGGCGCUCCAUCGGCGGAGCUUCCCCAGCCGCCUCCGCCUCCGCUUGGCCGGAGAGCCACCGAAGCCGCCGCCGCCGCCGCCGUCUUCAUCUUGCUCCGGGCCGCCGUCGCGCCGCGUCGGGAGACGCCCGCUUGCGCACCUCCCCUCGGACGACACCCGCCGGGCCUCUCCGUCUCCUCACUCCGGCUCCUCCGUCCAGCCGCCCUCCGCCGCCGCCCCGAGCCACGCCUCGCUCUCUUCCGCUCGGGCGCGCGCGCGUGGAGAAAGAAAAGCGGAUCGGGUAAAGAACGAGAAGAGGAGAAAUCGAGGAGGAGGGGGAGAGAAAGAAAGGAAAAGAGGAGAUGCGACACUGACAGACAUGCUCCUUGUCACUGACCCUUGGGCCCCACACGCACUGACCAUGGACCGUGAGCCGGUCCACCACCUCACCUCACGGUCUACCGUGCGCCGACCCCCCGGUGCCACUUGCGUAGUGGAUGUUUUGGGGUUCAAUGGAUGCGGAUUCUCUCGAAGAUUUGAAGAUCAUGAACUAAGGCAAGCCACUCUUCAAUCAUAUUGUCC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

359

LEP:

72.97%

ME_num:

122

MEP:

24.8%

HE_num:

10

HEP:

2.03%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.89

Avg Expression:

5.34

Tip: OSA-LNCN1872 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"3.128702175431410.00125864619755156
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA3.121804937699673.12408977211813e-06
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.977155730515330.00847059992012725