Chr:
Chr11
Start:
23181596
End:
23182348
Strand:
-
Ref_name:
OSA-LNCN1854
Sequence
(OSA-LNCN1854.1):
UUUAAUGAAUGAUCUUCAGAAAGGCUAUCAACUUGGAAAAAAAUAUUAGCAAUAGCAACAUCACGUUCAACUUAUGGUCGACAAGUCCUCUAAAAUAGUAACUUUAGAGUGCAUUAAAGAAUGUUGUGGCAGUAGCCUUUUUCAGGACAAUCAUGUGAAGUUGCCAAAUGUUCUCAUCAUCGCUGUACAUAGUUCAACCUAACAAACUAAUCUAGAUUUAUAACACUGCAGCAGGCAAGUAACGAACUACAGCAACAGCAAGUGGUGCGUGCCAAAUUGCUUGUUCAAAGUUAAACAUCACAGGUAAUAUGUACACAUGAAAAGAGUAACACUCUCAAAUGCGACAUUGACAAGCCCAACAAGAGUAUCAAAUGCACGAAAAAGACUAACUUGAAAGCAUCUGCACACUCAAAUGAUGGGAAGUUAACAGGAGUACAGGACCAAUACUAAUAUAUUAUGACCUUCAGCUUUCAGCUCAUAGAGCAUGUGUUGUGCCUAAAAUGACAUUUUAGCUCUGCCUACACAAUGCUAGAUCAACAGAAAUGAUGAAUAUACAGUGAACGAUUACUAUGAGAGAAUGAUACAGCUUCCAUGCUGCUGUAGAAGAAUCAUAUAGAAGCA
Sequence
(OSA-LNCN1854.2):
UUUAAUGAAUGAUCUUCAGAAAGGCUAUCAACUUGGAAAAAAAUAUUAGCAAUAGCAACAUCACGUUCAACUUAUGAGUGCAUUAAAGAAUGUUGUGGCAGUAGCCUUUUUCAGGACAAUCAUGUGAAGUUGCCAAAUGUUCUCAUCAUCGCUGUACAUAGUUCAACCUAACAAACUAAUCUAGAUUUAUAACACUGCAGCAGGCAAGUAACGAACUACAGCAACAGCAAGUGGUGCGUGCCAAAUUGCUUGUUCAAAGUUAAACAUCACAGGUAAUAUGUACAUAUGAAAAGAGUAACACUAGUAAAGGAACAUUGAUGUAAAGGAACAUCAUGUAAAGUAACGAACUACAGCAACAGCACGUGGUGCGUGCCAAAUUGCUUGUUCAAAGUUAAACAUCGCAGGUAAUAUGUACACAUGAAAAGAGUAACACUCUCAAAUGCGACAUUGACAAGCCCAACAAGAGUAUCAAAUGCACGAAAAAGACUAACUUGAAAGCAUCUGCACACUCAAAUGAUGGGAAGUUAACAGGAGUACAGGACCAAUACUAAUAUAUUAUGACCUUCAGCUUUCAGCUCAUAGAGCAUGUGUUGUGCCUAAAAUGACAUUUUAGCUCUGCCUACACAAUGCUAGAUCAACAGAAAUGAUGAAUAUACAGUGAACGAUUACUAUGAGAGAAUGAUACAGCUUCCAUGCUGCUGUAGAAGAAUCAUAUAGAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.11%
ME_num:
MEP:
66.26%
HE_num:
HEP:
26.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.67
Avg Expression:
10.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.03002828504827 | 6.71171855478342e-06 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.95397392054211 | 0.0173808929668878 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.61278377654996 | 0.0197623013727684 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.83328025322737 | 0.000816425958002391 |