RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1825

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

22959737

End:

22960983

Strand:

.

Ref_name:

OSA-LNCN1825

Sequence
(OSA-LNCN1825.1):

GGAUAAUGUUUUUUACUCUCUAUGCCUGUAUAUUUUUUCUAUCACGAUGUGUACAUGAAUGCUAACUGCAGUUUCAGUUUGUUCUUUUUUUUUACAAAUUUAUUGCUUCAAUUUGUUUUUAUGUAGGAAGCUGCACAAACAUCUUUUGAUAUUUGGUGCCAAAAAAAUGGAGGAAAUGCAGUGGUGCCCUUUUUUUACAUUAUUUGAUUUCUAUUAGCUUAUCUGCAAGCAUAGCAUGAAAGAGAAAAAAAAUCCACGUUACCAUCUUUCUUCUUUCGGUGUUAUAAUUUAUAUAUAAAGUUUCUGGUGAUUUAUACAUUUUUUUAUUUAAAAACCAAAACAUAUUUUUUUUAGAAUUACACAGUACAACACAGACACUCACAACGCACGUACGCAAACCCUACCCCUAUGAGCAUCUUCGAAGAUUGGGCUGGCAAAUCCUGUAGAGAUUAAAGUCACCACAGGCGCCUCGCUGUCGACGGGUACGUUGCCUACCACUGAAAGCACAACGCCGUUAAAUCCUGGAAAAUUUGCUCCCAUGGGGAGUCGAACCCAGGACCUCAGGUGCUACUGAGGCUCUUGUAACCACUAGGCUACAUGCCCUUUCGCAAAAACCAAAAGACAUUGAUGCUACAAAGUUUAUAUUUAUUAGAUUGAGAACUAAAAUCAGCACAUUUUCUGGGAAGUGCUAGUUAUAUUUAAAUGAAAGUUACUUUCAUGAGCUCCCCACCCGUUUUAUCCUUUCAUUACCCCAUCCCAAAAAUAAAAAAGGAAAAAGGACUAGCUAGGCUAGAAAAGAACACUAGUUGGGCGAAAAAAAAAAUCUCAAGUCUACGGUGGCCACGGCGGAUGUAGGCGACGGAGAUGACGGCUGUGGCGGAUGAGGCGACAACGGUGGACUAGGCGAUGAAGAUGACGGUCAUGGCGGACGAGGGUGGUGACGAUGGCGGCGGCCCAAUGGAGUGUGACGACGGAUGGACUAGGCGAUGAAGAUGACGGUCAUGGCGGACGAGGGUGGUGACGAUGGCGGCGGCCCAGUGGAGUGUGACGACGGAUGGACUAGGCGAUGAAGAUGACGGUCAUGGCGGACGAGGGUGGUGACGAUGGCGGCGGCCCAGUGGAGUGUGACGACGAUAGCGGCGGACGUAGGCUGAGUAGAUGGUGACAUGGAUGCGGAGGGCAGAUCAUCGCUCCUGGUGGGCCCCCGUUGCUUUGGGAUGAGCGUGUAGUCAAGCCUCUUGGUUCUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

451

LEP:

91.67%

ME_num:

36

MEP:

7.32%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.94

Avg Expression:

1.71

Tip: OSA-LNCN1825 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift2.32514315531030.0209265269842616
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA4.724743052093860.00139130089428181