Chr:
Chr11
Start:
22417959
End:
22424967
Strand:
+
Ref_name:
OSA-LNCN1813
Sequence
(OSA-LNCN1813.1):
CUCCCGUCCCGUCGCCGCAUGCCGGGCGGCCGGAUCUGGCAGAGGUCGUGGCCGCCGCUGCCGCCUCCCCUCCCACCGCCGCCGCACACCGGCCGCUACCUCCCCUCCCACCGCCGCACGGCGGGCGGCCGGAUCUGGCAGAGGGGAGGUCGCGGCCGCCUCCGCCCUUCCCGCCGCCCCCGCACGCCGCUGCCGCCUCCACCUCCCCUCCCGCAGAAGCCGCACGCCGCUGCUGCCUCCCCUCGCGCCGCCGCACGCCGGGCGGCCGGAUCUGGUGGAGGGGAGGCCAGAUCCGGCCAAAGACCCACCGGAUCCGCCGCCUCACCAUGCGCCGCCAGUCAGGAGGGGGCAGAGGGGGAGGGGAAGGAGCCCGCCGCCGCUGCUCACUGGCUGCGAGAUCCCGCCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.11%
ME_num:
MEP:
34.55%
HE_num:
HEP:
8.13%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.81
Avg Expression:
4.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.77804437776575 | 1.86249809584841e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.85186919071994 | 2.93324011602801e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.87544336552081 | 3.50172717842987e-43 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.15517388186582 | 3.68815913131362e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.54653990810041 | 3.06040790610984e-17 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.317688216763 | 2.92775269499031e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.33651742358686 | 4.16482873882789e-42 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.12984548278825 | 0.000353532394659109 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.95540655704883 | 0.00625323147210117 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.95543470497972 | 0.00634293675138928 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.95556158708938 | 0.00627154657580111 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.27238498515734 | 3.48581020968427e-07 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.558924693399 | 0.000826292317804984 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.76511085835569 | 2.8512773320853e-07 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.2397945401078 | 0.0387378377815437 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.90532209147986 | 5.78794592303142e-35 |