Chr:
Chr11
Start:
21859194
End:
21867494
Strand:
+
Ref_name:
OSA-LNCN1798
Sequence
(OSA-LNCN1798.1):
AAAGUGGGCCGGCGUCGCUUACGUCACGUCCGCCAGCCCAACAAAUGUUCUUCGGCCUGUCGCCUUUCGUCAUCCAUGGCGGUUUUGGGCCCAGGAUGGCUGCAUUGGCCGGCGGCGCAAGGGUUUGAGGGCGGCGGCGCCGGCGAGGCGGCGAGCUCCACCGGCGAAGCACCCCCACCGUGACGGCGGAUCCGGGCCUCCGAGGUCCGCGCUGCGCGAGCGCGCGCGCGCGGGGUCGAACCUCGCCUAGCUGGACGAAAGAAGGGGGGAAGCACACCGCAGAUAAAUCUAAUUAAUACAACCCGCAUAUUUCUCAGCAUUGACGAUUAUGUGGUGCGUGAAUAAAAUGUCUGACGAAACUGAAAAAAAAAGCAGAAGGCAAAAGUUUUUGUGCUGCGUGAAGCUGCAGCAUUUUCUGUUUUUUCCUUCUUUUUUUUUUUGUUUUGCUCUUCUCCAAAGCUGGAGGAUUUUACAUGCAAAGCAUGCUGAUUAAACGCCCAUCCACCAAAUCGUGACAUCCCACAUUUGGAGUGAUCAGCUCAGCAUCCUAACAGAAAAUGAAAUUAACGGCUCAACUGAAUUCCGAUAACCCCGGACUACUUCCAGUGAGCUAAUACAUGCAGAAAUAAAAUGCAGGAUGCAACUAAAC
Sequence
(OSA-LNCN1798.2):
CCCAGGAUGGCUGCAUUGGCCGGCGGCGCAAGGGUUUGAGGGCGGCGGCGCCGGCGAGGCGGCGAGCUCCACCGGCGAAGCACCCCCACCGUGACGGCGGAUCCGGGCCUCCGAGGUCCGCGCUGCGCGAGCGCGCGCGCGCGGGGUCGAACCUCGCCUAGCUGGACGAAAGAAGGGGGGAAGCACACCGCAGCUGUGGGAGAAAAUGACACUUUUGAUUAGGAUGGAUGGAUAUACGCUGUGUGUGGGAAGGGAAGAGGGGAAGGGAAUGUUAUAGGUGUGGUGGUACCAUUCCCUUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.9%
ME_num:
MEP:
30.49%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.71
Avg Expression:
1.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.63249002556976 | 0.00314639766813639 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.48194666230168 | 0.00589106019298951 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.47350328633685 | 0.00793414715377712 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.54447620344434 | 0.00992999600010631 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.35546521221535 | 0.0142239466730542 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.53706606285387 | 0.00280220335113572 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.33202101953268 | 0.0242502228166303 |