Chr:
Chr11
Start:
21021717
End:
21037755
Strand:
-
Ref_name:
OSA-LNCN1787
Sequence
(OSA-LNCN1787.1):
GGAAGGAGAGGGCAACGGCGGUGGCGGCGUUGUGGCGAACGGCGGCGGUGGCGGCGGCGCUCGCGGUGUUGACUUAGGAGGAACUCAUCUCUUCCCGCGUGGUUGCCUUCGAUUCGGCGAGGAGAAUCGUGGAGCGCAUGGCGCCGCCACCCUACCCCGGAUGCGGAGCGGGAUCAAAUCCGCUCCUGCAUGCAGGCGGCGACGGCGAAGAACUGAAGAAGCCUUGUCCUCUUGGAGCAAACUGGGAGACGACCAGACGUGGUGCUCGGGUUGAUGUUGGCAAAAGUGAUUGAUGAUCCAAUUGGUGCAAUUGGAUACUUU
Sequence
(OSA-LNCN1787.2):
AGGCCCUUGGUUUAUCUCAUACUCCUAUUACCGUUACGGAGAAAAGGGAAGGAGAGGGCAACGGCGGUGGCGGCGUUGUGGCGAACGGCGGCGGUGGCGGCGGCGCUCGCGGUGUUGACUUAGGAGGAACUCAUCUCUUCCCGCGUGGUUGCCUUCGAUUCGGCGAGGAGAAUCGUGGAGCGCAUGGCGCCGCCACCCUACCCCGGAUGCGGAGCGGGAUCAAAUCCGCUCCUGCAUGCAGGCGGCGACGGCGAAGAACUGAAGAAGCCUUGUCCUCUUGGAGCAAACUGUUGCCAAGCCUGAGGACGAUCCGUAAGCCAUUCUUGAUGAGGAAGAACCACGCAGGACCAAGGCAAACCACCUUUGGCCAUAUUGCUUCCUAUAUGUACAAAAUUAUGUUGUUUGGAAAUAUGCAUGCUUAGAUUACACGUUAAACUGUUUGGUCUCGGUUUGCGAAUGCAACCGACGGACUCACCUAUUAGUCGCACUUGAAUCUAGUAGGAUAUUGAAGUAACAUGUCCUGGACAGCUCCACAGAUAAUGCGUC
Sequence
(OSA-LNCN1787.3):
GGAAGGAGAGGGCAACGGCGGUGGCGGCGUUGUGGCGAACGGCGGCGGUGGCGGCGGCGCUCGCGGUGUUGACUUAGGAGGAACUCAUCUCUUCCCGCGUGGUUGCCUUCGAUUCGGCGAGGAGAAUCGUGGAGCGCAUGGCGCCGCCACCCUACCCCGGAUGCGGAGCGGGAUCAAAUCCGCUCCUGCAUGCAGGCGGCGACGGCGAAGAACUGAAGAAGCCUUGUCCUCUUGGAGCAAACUGGUGGACCGCACAGCAUCUUGGGC
Sequence
(OSA-LNCN1787.4):
AGGCCCUUGGUUUAUCUCAUACUCCUAUUACCGUUACGGAGAAAAGGGAAGGAGAGGGCAACGGCGGUGGCGGCGUUGUGGCGAACGGCGGCGGUGGCGGCGGCGCUCGCGGUGUUGACUUAGGAGGAACUCAUCUCUUCCCGCGUGGUUGCCUUCGAUUCGGCGAGGAGAAUCGUGGAGCGCAUGGCGCCGCCACCCUACCCCGGAUGCGGAGCGGGAUCAAAUCCGCUCCUGCAUGCAGGCGGCGACGGCGAAGAACUGAAGAAGCCUUGUCCUCUUGGAGCAAACUGCGGCAGGCGGGGGACACGGAGCUGCGGCGGCGGGGGACGAGAAGGCGGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.66%
ME_num:
MEP:
44.51%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.86
Avg Expression:
3.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.68063869083943 | 0.0253457746002692 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.74890767316236 | 0.0123421538384741 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.07646522199086 | 0.0121534210779166 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.64505744638267 | 0.0322711015184288 |