Chr:
Chr11
Start:
20701124
End:
20701664
Strand:
.
Ref_name:
OSA-LNCN1779
Sequence
(OSA-LNCN1779.1):
CGAUGCUUCGAGUGAUCCACAACAUCCACAUCUAAGAACAAGUCAAGAACACGUCACAUCCAUAUACAACAACACAUCAGGAAACAUUUAAUAUACCUUCUCCUCUAACAUCAAGAACAACUAUAGCAUUACAUCAACACACUAAGAACAUAAGAUUACAUGAAUUGGACUUAUGGCCACACCUUGCUAGAGAGAGGGAGGGUGCAGUUAUCAUUGCCAAUUCCAUGCACAAGAGCCACCGCCGUCACCGAAUCUGCCCAUGAGAGCUUCCGCCGUCGUGGUCAAGGAUUAGGAUAUGCUUCCCUUGAGUACGUCGACGGGGAGAAGGCCAAGGCGCCAUUGAGACGGAAGAGGCCACGAUGCUGCAGUGGCGGAGAGGAGAAGGGAAUGGGCUAUGGAGGCAGAGAGGAGAGGAGUAGGGAUUGUGGCGGAGAUGGUGGCUCCGGUGAGGAGACAAGAGGACGAAGAGAGGAGAUGGAACGGGGAUGGACAAUGAAAAGGAUAAGGAUGAGGGGAAAGGAAGCAAAAGUGGAGAGAGGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.67%
ME_num:
MEP:
28.46%
HE_num:
HEP:
4.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.95
Avg Expression:
21.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.39003475151088 | 1.12073483857895e-05 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.85081365335298 | 0.00751739071146451 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.57076873702724 | 0.000338916920091035 |