Chr:
Chr11
Start:
20490885
End:
20492286
Strand:
-
Ref_name:
OSA-LNCN1776
Sequence
(OSA-LNCN1776.1):
CCUCCCUCAGCAGCUCUCCCAGCUUGGGCAGGAGGGUGCUAAUCGCUCCCGUCACGAUCUCCAUUCUCGAUCACUCAAGCUCUUCUCAAUGAUGUUUCAAGUGCAGGGAUGACGACUGCAGGUUGCCGGGCUAAAAAGUCAGGACAAGGUUUGUAUCCAAAAUAUUGAAGUCAAUGUGUGGCAUGCCAGCUUGAGUUGGAUCGAUCGAUACAUCAAGCUUCAUUCCCGGUCAUACCAACUGCUCUACUUAAUUCAGUGCACGUACGCCAUUGUAUUCUAACUGGUUUAAUUACCUGAAGAUAGCACCAGAAGGACAAGGCUGAAGACGUGAGGAUCAUCAUGUUGCUAGUCUUCAUCCUUUGUUCUGAAAACCUCGCCGUGUUGUAUGAAGAUUAAUGAAGGCAUGUGCUUCAGAUUGAUGGUGACUUCUGACUGUCUACUUUUGGUGAUCUAAUGGACUAGGCAGUGUUUUUGUAGAGGAUAUAUAUGGUACAUUAUCAUUUGGGGGAUCAAUUGAAAGCACAAGAUAGAUAUGGACAUAUGUUAACAUAUAUGUGCAGACAAUGACCAUAUCUCAUUGUUUAGACAACACCGACUGGACAUGCUAUGUAGCAUAUCUACUGAACACAAUCAAAUUCUGGUCUAUGGAAACAGAAAUUCAUAGACCGCAAUAUGAUUGCCCUCUAUGAAGGUUAUAUAGGGCCUGUUUGAGAUAGCUUCUCCUAGAAUCUCCAGUUUGUAGAGGUUCUCUCAAACAGUUUAAAUUUUCACCCUGAUUUUAAGAAGUUAUAGUUGUAGAAUCUAUAAAAUGAACUAGAAAUUGGGUUUUCCAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.86%
ME_num:
MEP:
14.84%
HE_num:
HEP:
31.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.79
Avg Expression:
13.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 1.2162995417489 | 0.0183515269150786 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.83686086696046 | 0.000241002335433698 |