Chr:
Chr11
Start:
19118201
End:
19121405
Strand:
+
Ref_name:
OSA-LNCN1765
Sequence
(OSA-LNCN1765.1):
CUCAACUAUGGGAAUCGAAGCGUGAAUUUCGGUGCGACAGCAACGAGCUUCAUGUUGCGAUGAUCUCAUUAUCACUAGUACGAUAACGAUUUUUCCGUGCAGCCGAAAGCGAUUUUCAGGUGUGGAUCUUCCACCCGUCUGAAACAAAGUGUCUGAGAAAAUCCAAUUUUUUUCGUGCAGUUGACACACCCGCACACGAAAAUCACGUGCACGAGAAAAUAAAAAAUCAAAAAAAAGAAAAUCAAAAGACGCCCUGGAAGGCUGGAACCCUAAUCCAACUACCGCCGCCGUUGCCAGCCAGCACGAGGCCCGCCGCCGUCAUCCCCGCAGUCGCCCACGACGGAUCCAAACGCCCGAGGCUGGGAGACCACUGCUGCCACCGCCGUCGUCAUCGCCGCCCUGCCUGAGGCCCGCGCCAUCGUCCCCACGGUCGCCAGCGACAGAUCUGCCCUUCCCGCGGCGCGGUGACCGGUGACGGAUCCGCCCUUCCCGUAGUGGCAGGCGACGGACCUGCCCUCCCCGCGGUGGCCGGUGACAGAUCCGCCCUCCCCACGGUGGCAGACGACGGAUCCGCUCCGCCGCCACCACCCUAGCCGAUGCCGCCACCAUCAAUGCCGCCACCGCUCUCACCGAUGCUGCCGCCACCGCCGCCCUAGCCGAGGCUGCCACCAUCGCCGGGAGUGGGUAGAGGGGGAGAGGGAGGAGGGAGAGGGCUGGAGAGUGAGAGGGAGAUGGGAGGAGUAGGAGGAGAGAUGGGAGGAUGAGAGGGAGAGGGAGAGGGAGUGGGAGUGGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.79%
ME_num:
MEP:
87.6%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.69
Avg Expression:
4.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.61237357365643 | 4.15804327172255e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.55082966998414 | 9.67912475541849e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.85204417771292 | 4.69051232422799e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.74693858836851 | 7.63122494986573e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.75502469640223 | 7.1669619528335e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.64258751522555 | 5.38738007798454e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.46532072058318 | 0.000653949204209938 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.20660134106017 | 0.000611750354310592 |