Chr:
Chr11
Start:
19423320
End:
19423984
Strand:
+
Ref_name:
OSA-LNCN1759
Sequence
(OSA-LNCN1759.1):
AAAUAGUCUUGUCAGAAUGAUCACAGUAAAUAAUUAAUAACGCCAUGCAACAAUUCAGAAGGUUAUUUGGCUCAUUAAAGGAUGUACAAAAUUAAAAACAGAAGAACUGUAUGAUUGUACCAAAUAGUUGGAAUAUUGAAAUAGUAGUAUGUGGACCAAAUGGGUAAGGACUACCUGAAAUUGCCUAUAAAAUAUCUUCGCAUGAAACAAAGAUGAUAACAAUAUGCAUGCCAUGAAUGAGAAGCAUUCUCAAAUAAAACAAAUGAGGCAGUAAAAAAACUGGGUCUAGAAGGGGAUUACAUAACAAUAAUCACUACUUCAAGUGGCAAACAAGAAAAAAUUGUUCAAAACAGAGUUCUUUUCUUUACCAAGAACUAGCCAUCUUAAAGGCAGCAACAAAGAAGUGAAUAGUUGAAUAAAAGAAAAAUAAUAUCAUGAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.63%
ME_num:
MEP:
42.68%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.97
Avg Expression:
28.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.73037933238805 | 6.21499304892762e-72 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.72921771766349 | 4.38451575704587e-79 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.756907924917 | 1.57512983401087e-88 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.54508180647626 | 7.95608078764271e-35 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.7272081182607 | 2.55731306445265e-60 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.97716855836686 | 1.085279066215e-59 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.22420059000229 | 1.06328958343125e-15 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.8049430387614 | 1.20063576545949e-91 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 4.6819723730864 | 7.13857872560089e-05 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 4.25046282455168 | 0.00132708052945293 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.25926212098432 | 5.57892207819285e-35 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.88550860991789 | 1.94999165438462e-75 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.8454666565785 | 2.6332508216355e-92 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.57015585176365 | 0.0143537131037485 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.27968016656179 | 0.0188503506185201 |
| 16 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.95375727958004 | 0.0353157132244984 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.28277025862097 | 5.75822142195976e-70 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.69329824282435 | 4.53771101429131e-06 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.66542240175021 | 1.73376419098874e-106 |