Chr:
Chr11
Start:
18723157
End:
18723483
Strand:
.
Ref_name:
OSA-LNCN1752
Sequence
(OSA-LNCN1752.1):
CCCCACAUGGGCCCCACCUGGGCCAGGAUCCCAAAUGAAGUUACAAGCCCAUAGGCCCAUUAUAGGUGACGCAGCACCUUGUGCGUGUGAUUCCGGCCACACGAGAUGGAAUUCGGAGAUGAGGCUGGAUCCGUUGGAAAGAGGGCUCCGAAAGCUUUUCAUCAAGUACUCACGGGCCAAAAACGGAGGUCGUAUGCAGAUUCGGCGGCCGUUUGAAGUCAGCAGUGUAGCAGGUGGCCGAAUCGGAUUCCAGCACUUGAAGGACUCGAACUUGAUAUCUUGUUGUUCAUCCAUGAUGUGAGCAACGGAUGUAUCCGUAGUAGCCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.75%
ME_num:
MEP:
26.22%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.85
Avg Expression:
2.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.87291309921444 | 0.0402967106799496 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.04380468240126 | 0.0274481438112933 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.72860857639328 | 0.0270200005921932 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.54143603220958 | 0.0153861201239463 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.3565702104252 | 0.0411234392893353 |