RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1748

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

18509319

End:

18511248

Strand:

-

Ref_name:

OSA-LNCN1748

Sequence
(OSA-LNCN1748.1):

UUCCAUCUAGAACUCUUCCACAUUCCUGUUGCAUUAUUAGAGAUAGGUAGUUCUUCAUAAGAAAUAAAAGAUGACACAAUAGUCAGAGUACCGAUCUUCAUGCUUCCACAGGUACGGAAGUUAAAAUGAUUAAAUUAUAUGGGAGUACAUCCUAAAUUCCCAAUCCUGUGAAAGAUUCUACUUCUAUUCAAUUUCCGAAUUCGCAGGGAAAAUCUGGCUGGCAACCUUGCUCUUUAUAAGCAAAAGCAGCAAAAUAUGGACAACUGGACUGUAUUCUGUUUUCAUAAACAGAAUUCUUUGGUAAUACCCCAUCAAGCAAGUGCCGUGUAGGAUUUCUAUGUUUUGACUUACCCAUUCAUAUAUUGAUUUUGUUCAUUCCGAUGUCAGCACAAACCAUAGGUAGUAAAAUAGUAACUGUACAAAAUAACUAUAUAAGCAACGCACGGUUAUUUGAAAUAAGAACAAGGAUUCAAGGUAAAAAAAAAACCACCAUGAUACAAUUGAUAGGAACGACUGAAACAGAUUCAAUUAGCUGUCCUACCUAGGAAACUUGUACACUUUCGCCAAGACAAAAAUCGGCCUACACAUGGUUCCAUGGGUGACGAACCAUAAGUUGCGCAUGCUCAGGGAAUCUUACUAGAGAAUUGAAGCUAAUCACCAGUCUAUUCAAAGCACUCAAAAUCUGAAUGGAAUCCCUGCCUACUAAUUCCUGGUAAGACACAUAUUGAACAGCAAACAAAGGUAACAAAAAAACAAAUGAGGCAGUCAUAUGAAUCCCUGCCUACUAAUUCCUGGUAAGACACAUAUUGAACAGUCAUGGCCAUUUAAGAUAAAUCAUAUGAAAGUAAGAAUCAAACUAAUAGUUGCUUAAUUAGUCACACAAGAAGGCAGUGCUGCUUAGAGGUUGUAGUUCAUUAGGGUAUAUCCUAAAUUCCCAAUCCUGUGAAAGAUCAUAUGCCUAUUCAAGUUCCAUGUUCACAGAAAUAAACUUACAAUCUGGCUGAUAACCUUACUCCUUAUAAGAAAAGGCAGAAAGAAAACAUAUGGACUACUGGACUGUAUUAUUCUGGUUUCACAUUUUCCGAUCCAACAUACAGACUUCUUUAGCAAUACCACAGUUGCUACUACAGCUAUACAGCUGUAGUGUAGAAUUUAAGUUUUGGCUUACACAUUCAUAGAUUGAUUUUAUUCAUUCUGAAGUGUUAAGAAUACACAUAGGUAGUAAAAUACUGCUAUACAGCAUAACCAUAUUAACCAGGGUAGUCAUUGGAAAUCAGGUCCGAAUAAAACCAACCACCACAAUAUAAUACACAGGACGGCUGAAACAAACUGAAUUAGCCGACCUACCUUUCCACACUCUCUUGCAACACAAAAUCAGACCUACACAUGUUUCCGCAGGUGAUGAAUCAUAAGUCGAAGAUGCGCAGGGAAUAUUACUAGCGAUUCGAGGCUAUAACCAAAAAUCUAUUCAAAGCGCUUAAAAUCGGCGGCGCGGGAUUCCUUUCGGCUAAAAAUUCCUGGUAAAGACACCGUACAGAGGUAACAAAAUGGAGCAAAUCCCCCUUGCUCCCAAUAAAUAGCCCAGGGGCACCGCCACAUUAGAAUGGCUUUCGACUAAAUUUGUACUAACAUCAAGACGAGAGCUCCGUGGAGCAUCCUAAUUGACGAUAUGGCGAACUAACAUCUCUCAACUCUUUGCUGCACUCUGCCACUGCCAUCUUAGGCGCAAACGGCGACACAUCUGAACUAGGGGGCGUCACGUGGUGGUGCUGGGGGUAAAUGGGGGUUUCAGUACUAAAAAAAAACCAAUCCAAAUCCAUGUCCUGAUGAAUCUCCCACAUCUGCUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

110

LEP:

22.36%

ME_num:

381

MEP:

77.44%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.70

Avg Expression:

3.04

Tip: OSA-LNCN1748 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-1.527406039970970.0177400120716597