Chr:
Chr11
Start:
18076659
End:
18077641
Strand:
-
Ref_name:
OSA-LNCN1742
Sequence
(OSA-LNCN1742.1):
AUGGUUGUGAAAAUGAUUUGGCUUUUUUUUUUACUAUUUUCCUCCCUAGGUGGCAGAAGAUCGGUGGGCCAGUAUCCUUGGCACUAUGCUGGAACUCGCUACUAGGUUUAGGUGACCAACAGUCAAGAAGGAUGACGUAAGCGGCUGAGAAUUGAAGCAGCCGCGUUCUGGGAGAACGAGCAGUGUUACAAAAAGAGAGGUUUACAUAAUUUUUUUAACAAAACAAAUAGGCAAACAUAUAUAAAAAAUCAAUGGUAUCAAACAUUAGAAACCGGAGAGAUUGUUUUUUUGGAUAAAUGAUUUCCUCCCGGCCUAGUGUGUAACCCCAUCUCAAAAAUUGUGGUUCCCCCAAGGACACAUUCCAGAAAGUAGUUAUUCCAAAGAUCUAUUUAUAGAAAGAAGUUUUUGAAAGGGGCAAAAUGCAAAAAGGUUCAGCUCCACAAUGUUAUAAAGCACCAACCCGAAGCAGGCUUCCAGAACAGAAAAAGCUUAGUAUCAUUGAUUCAUUUCGAUAUUUCUUGGUGCGUUUCCCUUCUCCGAAGCGUGCACAGCAUAUGGAUCCUGCGCGUGAGCCAGCACGGGUGCUACGGGGGAUCAAGAGGAUUGAUCAACUCGCCCAUGGAUUGAUGGUUAGUAGUUCGUCCAUUCCAUUCAAUUUGAUCAUUUGUUCUUCUGCAAGUCUCAAGUCCCUGGUCCCUCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.99%
ME_num:
MEP:
8.54%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.95
Avg Expression:
7.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.33714553729536 | 0.0244022822271114 |
| 2 | 9311 // leaf // control--/--9311 // leaf // salt | 1.50341879360498 | 9.35002752769027e-05 |
| 3 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.43883663125843 | 7.36047450913103e-05 |