RiceNCexp:Browse

OSA-LNCN1739

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr11

Start:

17937923

End:

17939719

Strand:

Ref_name:

OSA-LNCN1739

Sequence
(OSA-LNCN1739.1):

CAAUGGUAAAAAGAGCCUAUGUCUCAAAGAAAAGCAAUCCUGACAACUCAGAAGAAGAAAAAACUGCACUUAUAAUACUGGCAACCUCGGCACAGGCCACACCAACGUUCUCUCUUGACCUCUACCGAUUCCUGGAAUUCUGCUCCUAUAUUUGGUAUCCAAGAUAAUGGCUACGGUGUCGGAGAAACACAGGAGCCAUGCAUGAUGGGGCUCUAAGUAUCACACAUAACCAAAGGUAUGUUUGUAACACCCUCCAAUAAACACAAUAGUCCGCUCAACACAUUGAAUGGGCCCAUAUGCGCAUAACUUUGCUUACACUUUUAUCCUCGUUUUUAACUCGGGGUACCACAUCAAGGCUUAAAACAGGCUACAAACAGGCUGCGUGUUAUAAUUACCCCUCUUAUGGGCUGACGUCUCUGACAGCUCACCACACAAACGACAUAGGCCUAGAAACUCCCCCGGAUACAGGGCAGGGCAGGCCCGGCCGUAUGCACACGCAACCAUGCAACUAAGCUUUAUGAAUGAACUGCAUUAGCCCGCUCUACAUGUUGAGCGCGCUCACUUUCGUAUAGUACUCCACUUACAUUCGUACUUGCUUCCUGCAAAAGGAUUAGCACAUGGUAAUAUGGUUGGAGCACAAAUUAAACUACCAACUACAAAAACCACUUAUUGGCCCCUUGGACCGACUCCACACUACUACUACUACUACAGGCUUAAAAUGGGCUGAUAUAUCACAAUGAUAGCGGUAGGUGCAUGCUAGCGAUUAAAUUAGUUACGAGGAGUAUUCCCCAAGUAUCCAUAGGUAGAGGCAUCCCUAAGGCUUGUUUAGUUUGUAGCUAAACUCAACCAUGCCAAAUAAGUUCCAAUAAAAAGUCAUAUAUUUCAUUUGGUGAAACACUGGCAGUCAAAUUAUUUAGCAUCCCUCUAAUAGCUUCAUAUACAAAUUUAAGCCCACACAAUGUUGAAGAGAAAAUUGGCAACAACUCAAACAACUUUCACCAAAAUGUUACCAAUGGUCAAAUCUUGCUCUUGCUAAAAUGAAUCGGUAAGACUAGAAAUUGCAUGGAACCAUAACAUGCUCUCCACCUGCAAGGAAGGCCCAGCCAAGAUGACUGUAUCUGCCACUUCAUAUGCACACAUACAUAUCUACCUUAUACGGAAACCUGUAUUUAUUUUCUUGCUACCCUAUUUUUCUUUUUAAAAAAUUUUCAAGUCCCAGAAUUGUUGCUGAUUUAAUGUUUGAACUAAUGUUUUAUAAAAAUGAUGCCAUUAGGUUUAUUUCAAAAAUGCUUUCAUGAUAUUAACAUUUUGUCAUUAUAUAUCAUGAUUUGUAGGUCAAAAUGGAAUCAUCAAGAAAGGACAGGUAGUAUAUGUGUACAUUUCUCCUUGGUUUUGUGCAAUAGAAAAAUGAAGUGGGCAUUUUUCUACACCCCACGUCCCCACUGCCCACUCAGCCCACACUAUAGGCUGAGGCAUAUGUAGUACUUCUCUAACGCUAGAAAAAAGAAUAAAUGAAGAGGGUAUCCUAUCUUACUAUAAAGUUAUAACCCACUAACUCCUAAAGCUUAACAUGCAAAGAUGCCACAUCAUUAUCCACUAACAAGUUGACACAUCAUUAUCCACUAACAAUCAAUACAUUUAAUAUCAUGCAAACAUGCUAUAUUAUCUAUAAUUUAAAAUCUAUUACAUUUUAGAGCUUUUAAAAUGAAAGCAUGUUAAAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

410

LEP:

83.33%

ME_num:

MEP:

16.46%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

coleoptile

Tau :

0.79

Avg Expression:

1.04

Tip: OSA-LNCN1739 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	2.26355337319715	3.70620888166294e-05
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	1.62122766680304	0.00504106093217517
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	1.73331291451499	0.00164094148029761
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	1.38268485617145	0.0440001304924512
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	1.94662089434853	0.000174536731238654
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	1.31500678053348	0.0278591882328893
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	2.00578167699136	6.95063529047841e-05
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	1.98453473754493	0.000387612976884414
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	2.15260802662533	4.77098650497748e-06