RiceNCexp:Browse

OSA-LNCN1733

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr11

Start:

17695785

End:

17696899

Strand:

Ref_name:

OSA-LNCN1733

Sequence
(OSA-LNCN1733.1):

GCGGCGGCGGGCUCUUCGGCAUCAAGGGGUUCUUCUCCAAGAAGGUGCAUUGAGCCAUGGAAGCCUUUCUUUCACCUUAGCUAGAGAUCCAAAUAACUUUUAAUUUUCUCCUCUCUUUUUUACCCUCCUUUUUUUACUUUUCUUUUUUUUUUUACCUUUUGUAACUUUUUUGUUUAACCUUUGGGGUGCUUGUGAUCAUGAUGAUGAUGAUGAUGGCUGUUAAUUACAUGUAAUUAAGCCAAUAACCUGUUUUUGUAAGUUUGAGCACUGCCUACACUCUGCAGCCGGCCGGCACAAACACAAGCAGAUGAUGAUGAUGAGAUGCAGAAGAAGAUGCUCUCUGCUUGGAGAAGAGAUACUACUGAGUACAUUAUUCCUUUGCAUAAUAAUGCUGCAUGUGGAUAUGAUUGUGCCGGCACAAAUGGUUCAUAUUUUUGCAAUGAAUUUUUGUUAUGCCGACGCUUGUUUUGUUCUUGGCUAAAUUUUUUUUUUCAG

Sequence
(OSA-LNCN1733.2):

UUCGGCAUCAAGGGGUUCUUCUCCAAGAAGGUGCAUUGAGCCAUGGAAGCCUUUCUUUCACCUUAGCUAGAGAUCCAAAUAACUUUUAAUUUUCUCCUCUCUUUUUUACCCUCCUUUUUUUACUUUUCUUUUUUUUUUUACCUUUUGUAACUUUUUUGUUUAACCUUUGGGGUGCUUGUGAUCAUGAUGAUGAUGAUGAUGGCUGUUAAUUACAUGUAAUUAAGCCAAUAACCUGUUUUUGUAAGUGUGAGUGAUUGAUAUUAUGUACUAUAGUUUAAUUAUGAUUAAUUAAUUAGCACUACAUAUAUAAUAUAAUUAGUAUGCAUAAUUAAGUAUGGUUAUGCAGUUGAGCACUGCCUACACUCUGCAGCCGGCCGGCACAAACACAAGCAGAUGAUGAUGAUGAGAUGCAGAAGAAGAUGCUCUCUGCUUGGAGAAGAGAUACUACUGAGAUCAUCCUCUGAUUGGAUCUUUGCACAUUUUUAUAUUGCUCUGAAAGGGAGAAAAGAAUUUCUGCGUUUUAUGUUCAGUUUAAAUUCAGCCCCCGGAAACUGAACUUUGUGCAGAGAUUUCUGCAUUUUGCACUGAUGAAUUUAUGCAAAAUGUAGAAGUAUUUUGGUAUGCAAAAUUUCUCCCUUUUGAGGCUUUGACAAAGGUGGCAAGUGGAAUUCAUUAAUUAGAGCAAAUUGCAUGCUUCAUAAUGGAUAUCUCUGCCUACUAACCACACCAGUCUACUAGUUGGAAUAUCACAUUAGCUCAUCCUUAAUGAACAAGACUUUGGUCUACUCAAGGUGUGUUCCAAAGUCUUCGUGACGUCUGGGACCAUCAUGGUCACUCCAGGAUUACAAAAUGUAAGAGCAAGUCGAUGUCGAUUGUAGUUCUAUUAUGUUGGGCCUGCUCGUUUGAUAAUUCGGAUAUUUAUUUUUCUAAGAUAAUAGAAAUGAUUUACAUCUUCGGUCUCAGAGAUAAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

182

LEP:

36.99%

ME_num:

236

MEP:

47.97%

HE_num:

HEP:

14.84%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

coleoptile

Tau :

0.68

Avg Expression:

7.73

Tip: OSA-LNCN1733 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	1.62984576455518	3.7059973131732e-09
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	1.32562747236146	6.65272514372679e-05
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	1.74950552353047	1.11573204467862e-08
4	Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"	-1.8227829625165	0.0124922970456382
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	1.04518662310419	0.000596600303679546
6	Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae	1.90429556924092	0.0112553297109055
7	Nipponbare // panicle // AM--/--Nipponbare // panicle // PM	-4.57847794542729	0.017006885988481