Chr:
Chr11
Start:
17082794
End:
17083352
Strand:
.
Ref_name:
OSA-LNCN1719
Sequence
(OSA-LNCN1719.1):
CCCGGGGAUACCAUGGUUGGAGCACCAAGGCUUAUAAGCAGGCCCUCACCCACCUAAACUUCCAAGGUGGUACUAAACCACCACUACACAUCCACUUCUAGGCCACAUGGGCCAAACACACACUACUAGGCUUCAAACGGGCUGGGGUGUUACAUUCACCCCCCCUUAAGGGCUGACGCCCCGGCAGCUCACCGUUUACACGGCAGAGGCCCAGAACCCCCUCCGGUGCAGACCAUGGCCCAAAGCACAUACAUCAUACAGCGGAGGUUUAUGCUCUGAUACCAACUGUAACACCAUGCCUCCAAAAUCCGCAUUAGUCCGCUCUACACGUUGAGCGGACCCACGUACGCAUGGUAUCCCGCUUACACUUUCGUCCUCGCUUCGUGUAAAAGGGUUAACCCGGGGAUACCAUGGUUGGAGCACCAAGGCUUAUAAGCAGGCCCUCACCCACCUAAACUUCCAAGGUGGUACUAAACCACCACUACACAUCCACUUCAGGGCCAUAUGGGCCAAACACCACAUGGGCCAAACACACACUACUAGGCUUCAAACGGGCUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.04%
ME_num:
MEP:
8.13%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
2.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.75232112591986 | 0.00721176605430702 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.3539325777924 | 0.0319919870946242 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.82364353202955 | 0.033449460708887 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.59684426087466 | 0.0125595295676366 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.22947454073366 | 0.010642726148914 |