Chr:
Chr11
Start:
16256747
End:
16258438
Strand:
+
Ref_name:
OSA-LNCN1680
Sequence
(OSA-LNCN1680.1):
CCACCCGAGGCAUCGGAUCAGAAAUUUAAUCUCAGGUAAUUGCAUACUUGGUAUAAAUAGUUCAGGAAGAACCAUGUACCAAUAAAUAUAAUCAUAAAACAACAGAAACGGCAACCAAAAAGGAUUAAAGUGUUCCCUUUUCUGCAAAAAGAUCCCUAUACCACUUCCGCUUCAGCGUUAUCAGAAAAAAAGGAAGAACUGAAUUAAUUUUGUAGAACAUACCUCACAGCACGUCAAGUGCUAAAGAUGCAUAAAGAAAUAGUUAAAUUUAUAGUAACGGUUCAAAACAAUUGAAAGUACUGUCAUAACUCAUGAGAUAAGGAUGGGUUGUCACACUGAUAAACUUUUAAUAAAUUCUUUCAUGUACCAAAUCUUUAAGAACAGCCAUACUGCUUCCAUUGUGGCGUUACCAAAAAGACGACAAAAGUGAAUUUAUCAUUUUGUACACGUGAACACAAACAAAUGAAAUUAAACUUGCUAAUUUUGCUUAUGAGAAAACAACCCAAAAUAUUGCAGAACUCCAAAUUAUCACAGAAGAAUGAAAAGUGUAACUAAUUAAAUUUUGUCUGCAAGAAGAAUAAGGUCAGAGUCUUUAGGGGCAGCGUAACUUCAAGUCACAAAUACUAGCAGGCAAGCUAUCCUACCAAUACUCUGACCAAUCUUCCAAAACUGAAGUAUCAAUACCUCAUCCUGCAUUGUGCAUCAGGUCAUCACCUCACCAGUCCAUUUUUUAACAGAGAAGGGUAGUAGGUCUUUCUAAACAAAGUAUCCUCACUAAAAACCUGCCAUAUCCUCCAAAGACCUUUAAUGUACUGGAGUUCAAAAUUUUGAGUCGUGAUUACAACCAUACCAUCAAUCUAUAUAAAAGAAAUGCGGCCAAAUUUAGAAAUGUUCAUCCUGAUACACUUCAACAAGAGUGAUACAAAAAAAAUAAACCCAAAAAGGCCAAAAAUAUAUGUAAACACACCCCAUGUCUAUGUGCCUUUCAAGAACCCUUGGUGGUAACUCCUUUCUACCUGAUAAAUAGCUCGGAUACUUGCCCAGAACAUUCACAAACCAUAACAGCCAGGUUGAAAACAUACUGAUGUCCAUAUCUUACUUCAACCACACAACAUAAUUGAGUAAACAUUUACAGAAUGAUAGCUUGAGUCCAAAUGAAAUUUAACCGAACCACUGCCUGCCCUGCCCUCAUGAUUCUUUCCAAAACCAACAAUAACAUUAAAAACCUUCCCUAUCUUCCAAAAACAAUGUAUUCUUUCCAUUUGAGAUUCUUACUAUUCUCAUGGAAACACCAUCGACAAUCACCGACAUCCAAUAGACGCACAAACAAAAAUUCACCAGCAUUGGUCGGCCGCACGCGUGCCCUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.15%
ME_num:
MEP:
77.03%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.79
Avg Expression:
10.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.87272150991387 | 9.6003332700773e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.61442891118616 | 4.31876801544129e-15 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.96436790800276 | 6.30832761895777e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.64056799176671 | 0.000409263076803956 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.98518990792719 | 1.75958639158516e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.10618062368669 | 0.00104582181846874 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.08909385966106 | 0.000438297717713979 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.68280688516475 | 2.69728059640732e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.64862877403233 | 1.94609875791081e-06 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.411031145089 | 1.36583656301798e-08 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.13769443204645 | 0.0171756515213411 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.76351673640721 | 2.56944376461389e-08 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.06206045990703 | 1.83920988018166e-09 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.16409244083025 | 0.00454167314851575 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.7259413591741 | 2.75404849544825e-08 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.12787988582633 | 6.60448424129777e-10 |
| 17 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.84538277739894 | 4.97920719538576e-07 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.04910425761075 | 0.000490766149770169 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.10369352849024 | 0.0414757541873638 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.64301695409955 | 4.2485919228241e-13 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.35427500842225 | 4.58852169109828e-13 |