Chr:
Chr11
Start:
16247182
End:
16247681
Strand:
-
Ref_name:
OSA-LNCN1679
Sequence
(OSA-LNCN1679.1):
GCGAGCAGCCGGGGGUCACUUUUAAUACUUUAGAUAUUUGUUCAGACGAUGGAUGUACAUGCUCAUCGGCUGCGCUCCCAUGAACCAGCAGUAACUUGAUCGAUUAUAUUGACUUGAACGUUCCAUUUUUACAGGUGACAUAUGAGGUCCUGCUCUUAUAGGUUGAUUGCUUGGUGGAUGAGAAUGUAGCAAGUAUCUUAGGACAUGGCCAGAUGUGUGGAUGCAGUGACAUCAUUGUUUGGGCUUCAGUAAAUAGGAGGAACCAAAGUAGCAAAGAAGGCUCCUGAGUUCAUGAGGCAUAUUUUUAGGUUCUUCUGGUUAAUAGUUGGCUUCUUUCAAAACAAACAUAUUUGUGGUUCGUAUUCUACUUAUAACCGUUGCCUUUGAUUUUACUGUCACUUUGUGAGUGUAGAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.93%
ME_num:
MEP:
3.46%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.43232882299925 | 0.0339583352016191 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.53422849312767 | 0.0229557661945624 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.6844196997384 | 0.0180361420728076 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.79646445203839 | 0.0138896857723791 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.49715977027819 | 0.0204159360023809 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.97474199578889 | 0.00986666291303993 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.38606706487195 | 0.034954376502179 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.11522148153659 | 0.00566814301012644 |