Chr:
Chr11
Start:
16004392
End:
16005126
Strand:
+
Ref_name:
OSA-LNCN1675
Sequence
(OSA-LNCN1675.1):
CUCCCAACUCCCUUUCCUCUCGUCGUCCUUAUCCCCUUUCCUCUCGCGAUUCUCUCUCUCCCUCUCCUCCGGUCUUCCCCACCCGCGAGCACCGAUGGCGCACCAGCGGCUGGACUGCCCGGAUCCGGCGCCACUCCUCCGGCGGCCUCACAUGGGGAGGGAGCUUCGGGGGGCCUCCCCACGGUGUGGGCUCGGCGGGAGGCCUCCACGGCGGCGUGACGGACGGUGCAGUGGGUGGCCUCUCCCGGCGGCGUGACCAUGGAGGGGCGCAGCGGGUGGCCUCUGCUCUGCGGCGGGCGGCCAGAUCGGGCUGGUGUGCUCGAUGGCGGGAGGAUUCACCACGUGUGAUACUAGCUGCCAGCAGUUUAGUAGAAUUUUGGUGGAAGAAUCAUUGCUCUAAGGUCCCUAUUCAAUGACCAGUCAUUCAAAAUGAAGCCAUAAUCAGUCUUCUAAAAAAACCAUAAUCAAAAACUGCACACUACCAUGCAUACAACUGAAGAACAAGAGCACCAUGCCACCAAACACAUCACCCGAAUUCAGGGCAAAACAAAACAAAACGGCAAAAUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.67%
ME_num:
MEP:
41.46%
HE_num:
HEP:
53.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.74
Avg Expression:
20.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.12171708320538 | 0.0392078278629212 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.09661726198484 | 0.0141871822765179 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.78569252516635 | 0.0250573955563071 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.05035937903394 | 0.0236449297941474 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.25564846296042 | 0.0336201739096719 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.2429381105525 | 0.0199348032735191 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.11604239104982 | 0.00119039954214139 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.10783713828982 | 0.000145797854214193 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.42730909313588 | 2.64746950693177e-29 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.38832735877219 | 0.000123468661631191 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.03394724403671 | 0.00166968835324419 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.16279243397125 | 4.64929262059994e-06 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.12651692532264 | 0.000398372420720395 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.05467765506456 | 0.00201070863060131 |