Chr:
Chr11
Start:
15459931
End:
15461935
Strand:
-
Ref_name:
OSA-LNCN1656
Sequence
(OSA-LNCN1656.1):
GUGGGAUUUGAGAAUCAAAUAAACAUGGUAUAAGAAGCAGUAAUCACUAUGGCUAAAGCACAGAUCAACAUUCAGCCACAAAAGGAAUACAUAGUUCAACUUUGGAAUAUAAAAGAAAGCAUAAAUGUAGAAAUGAGAACACUAUGAACUGAAACAAAUUACUUUAGCACAUGAUUGUGUAGCAAAUCCAAAUUAAAAUGCAGAAAUACUAGAAAUGGGUACGUGACACCGUGGGAUGAGAAACAAACAACAAAGUUAGAUCCGCAAUAGUGGAGUACACAAAUAAAACAGUGCAUGUGAACAAAUACGGCAUUUUACAAAAAAGAAAAAAAAAAGGACCCUCCAUAGAAAGAAGUUGGUAUACAAACACUUGAGCAACAAGUUAAAACAUGAUACAUUUUGUUUUGCAAUAAUUUAACAUGCACUGAUACCCCAUAACCCGUCUCAUUGUAAAAUUGCAGUGUUGUUAAUAGUCCACCACCAUCAAGCAACUUAAUUUAGAUAGUAAAUUCUUGUGACAAUCAAAGAAAAAAAUGAGACUGCCAUCAUUUCUCUUAGAUCAAGAGAAGUGUUAACAAUUCAUGAAAAAAGAGCAGAAAGAAUAAAUGAACAAAAUAACAGAACUGUUUACAAUUCAUGAACAAGAGCAGAGAGAAUUUAUGACCCCAAACUGUAGUAUGCAAUGAAUUGAUCAAGAGAAGAACGAAUUUGUGAUCACAAACUGUAGUAUGCAAUGAAUUUAUUACUGGAUAUCAAAGAAAUAUCACAGUGAAGAUACAGAGACACAAUUACUCAAUGCCUGAAACAUCAUAAAUUAGAGAUACAGAACAAGUACUAAAUCCCUUAAGAUAAUGCUUCACCAUUUUAGCAAUACAGUAGUCAAUCAUACAUAAAAGAUGCAUCACAAGACUACAUCAAUGUAAGAUCAUUAUCUGUAACAGCCCUAAUUUCCUUAUGAACAUAAUCAUAAGGAGGCUGCAUCAAUGUAAGGACAUAACAAAAGCAAUUGACUUAUGAACAGGAAAGAAAAACAUUACAAUCAGAAGGGAGAGAAUUUAUUACAACAUAGAACUACAAACAUAUAUCAUGCUUGAUAUAUGAAUCUCAAAUUCUUACCAACACGAAAGGAAAUAAUGUAUAACAACAAACAGAAGGGAACAAAUUUAAAGCUUGACCUAAUCUACCAAAUUGGCAAGCAUGCAUCUAAACAAUCAAUUUCAUACUAUAUCAUGCUUGUUAUAUAGAGAAGCACAAAAUCCUUAUGAACAGGGAAGGAAUUGUGUAACAGUUAACAACAAAACAGAAGGGGACGAGUUUAUUACAACAUGGCACUAGAAACAUAUUUCAUACUUCAAAUAUAUACAAUCGCAAAACUGCAUAGCUCUUUAUGUAUUUCUUUAACUAAAUGUUGUAUUUAAUAAAAACCCAUGGUAGCAAUACAUCAACCGAUCAUACCAAAAAAUCUGCAGAAUAUCAAUUACCACAUCUACGCAGUCCUGAUUUACAUAAUUACCAGUAUGAAACAAACAAAUAGCAGGGCACAUUUAUCCAAUCAUAUGGAUACAAUCAUCGACCAUACAGAUGAGGAUACAGAAUCAUACCGUUACCCCAUCUGCACAAAGUACACUUGUUUUCCCUAAUGAUAUUCACGCAACCAUGAUUUCCACAACUGACAUGAAUGAAUGCGUGAUGCAUGGAAACCACAUCCAACCCAGUAACAAACAUACCGGAUGAAAUACAUCCCAAAAAGCUUGGAACAGAAUGCACCUCGAGCUAUUGACCAAGAAAACAAAUCCAGAUCUAGCAAUAACCGCAGAUCUGAAUCCCCAUCAAGAAAAGGUAGGGGCGCGAUGGGGGAGGGAGAGGGGGGGGCUUUUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
41.26%
HE_num:
HEP:
56.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.77
Avg Expression:
21.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.35909596740718 | 0.000169930466361237 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.08217985049849 | 0.00602108668332357 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 7.58516184141818 | 0.000140612048372326 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 9.1898466643543 | 7.5284036694437e-11 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.16809957304081 | 0.00372719886195 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.16802567619366 | 0.00377670257237577 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.16791226495191 | 0.00374771497927172 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.83552046617066 | 0.000258703790401814 |