Chr:
Chr11
Start:
15222877
End:
15223364
Strand:
+
Ref_name:
OSA-LNCN1640
Sequence
(OSA-LNCN1640.1):
AUACAUGAGUUUAGAUAUAUGAUGUUUAGAUUCAUUAACAUCUAUAUAGACUUUUUACAUUGCCAUAUUAAUGAAUCAUGUACAUACAUGUGUUUAAAUUCAUUAACAUCUAUAUGUACGUGGACACAAUGCUAAAAAGUCUUACAUUGUAAAACAAUGUAAAACGGAGGGAGACGGAGGGAAUACCUUAAAAAAAAUACAUUGGAAUACUACGAAUAUAAACAUACCUCUAUUAUUCACUCCUAUGUUUUUUUUAACCUCUAUUAUUCACUCCUAUGUAUUAUUCACUCCUAUGUAGUAUCAUAUUCACUCCUAUGUUUUUUUUUAAGUCCUAUUCACUCCUAUGGUUUUUUUUUAAGUCCCAUGUUGUUUUUAAGGACGGAAGACGUAACAUUCAGUCCUACUUCAAGGACGGAGGAGAUACUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.06%
ME_num:
MEP:
5.28%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.98
Avg Expression:
13.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.55844340380536 | 8.28332177261808e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -8.24256066181609 | 1.04935991988633e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -10.2498640395163 | 3.89619512431282e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -9.25379296629762 | 9.75335531117899e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -9.49991732295247 | 9.5519050946439e-15 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -8.70485423446054 | 1.39820602245642e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -7.91747557775323 | 1.07004775096029e-19 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.2889963229341 | 1.40805674491628e-21 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -10.0625887599184 | 1.1895984659404e-16 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -8.68254830894206 | 2.54317173295085e-16 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.71990155617878 | 0.0219598049405946 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -9.95706538573918 | 4.83244726074184e-16 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.34430858868127 | 2.61780587258912e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -9.71352492567108 | 1.26783210676129e-15 |