RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1639

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

14960794

End:

14968676

Strand:

+

Ref_name:

OSA-LNCN1639

Sequence
(OSA-LNCN1639.1):

CGGACGGUUUGUUAUAAAUAAAAAAAGCUAAAAAAAAAAGUCCCUGUCCACGUUUAUUGGUGCCCACACGUACAAUCCAUUCAUUCCUCAUCGGCUCGUCGCUAGUUUGUUGCUGCACCGUCGAUACCGUCCAAUCACGCUCAUGUUCAUGGCUGUGUGGGUGUUAGAGAGGCGGAGGGCUGAGCUACGCAUGUGGCCAGGUAUGGAUUAACAGGCCUCCGUCUGGAUUAGGGCAUCUACAACCAAAGCUAUUUUAAGAGUAUCCUCACUAACUCAAGGUAAUCUCUAGGAAACUUAUCUCUUAGUGGAGGAUAACCCUAAUAGGUUCUUCAAAAUCUAAGACCACUUGAUGAAGAUACUUUAGCCCACAACAGGGUAUCUCCGGCCCAAGGUAGCCCCAGGUGAAAAAUGCCACCCCUGCCCCUACCUUCUAGCCCAGCCAGCCCACCCACGCCUCUUUCUCUCCUCUUUCUCAUUUCUGUCUCUUCACCCGCUCUUCUUGUCUUCUCCCGCUGUUGCCUCCUCUCCUCUUCUCGUCUUCAACGCUUCCUCUCUUCUUUCCUCCAUCCCAAUGCGCCGCCACCCCUCUCCCUCCACCCGUCGCCGCUGGUGGCUGAUAGCGAGCAGCGUGGGCGAGACGCAGCGUCGCGGGGUCAUCGCCGUCGUCUCCGUCGCGGGGUCGUCGUCGGGUCAUCUUCAUCAUCGGGUCGUUCGUCGUCGAUCUCCUCUUCCCCGCCACUCGUCGCCGUCCACCUCGCCGGCGCCGGGCGCGGUGGCGGACGGCAAGCGGCGCGCGGGGUGGCCAACGACGAGCGGCAGUUGACUGAUGGUGGGUGAGCUCCACCAUGUGGUCUUUGAUUUCAAGCAAGGCUCAAAUUGCAUGAUAUUGCAGUACGUACUCGUCAUAUGAUGAGAUGAAGGAGAAAAGAUGGAGGAUGACUCACCGCUAGUAUAAAGGACAACCUCUACCCAAACCGUAAGAAGGUGCAAAGAGAGAACGAGACUGAUUGAGGAAAGAUUAAUUUGCUUUGAUAUUUCUGGGGAAAGAGGAUGUGGUCCUCGAUUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

79

LEP:

16.06%

ME_num:

240

MEP:

48.78%

HE_num:

172

HEP:

34.96%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.61

Avg Expression:

11.19

Tip: OSA-LNCN1639 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-1.512237855672110.0470160359002492