RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1622

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

14080837

End:

14081434

Strand:

-

Ref_name:

OSA-LNCN1622

Sequence
(OSA-LNCN1622.1):

GAUAAGGCUCGCGCGCUUGGCUCUUCUCGAUCUCUCUCUCGGCUUCUCCUCUCCUCUCUCUCUCUCUCUCUCUCCCGCCUCUCCCAUGGGCAGCGUAGGCGGCGGUCUCCCACGGGCAGGAACGCGCGGCAGCGGGAGGGAGGCGACAGCUGCGGUGGCAGCUGCAGCGACAGCGGCAGGAGUCACCCUCCCCUCCACUAGAUCCGGCGGCAAGAGGGGAGGCGGUGGCUGCCCGGCGGCAGGAAGCGGUGGUGUCCCGGUGGCGGAAGGAGUGGCAGUGGUGGAGCCCUCCUCUGAAUUUUGUGAAAGAUUCAAUGUUAGUGAAAGAUUUUAGUGAUGCUUUUCAAUGUUUAUUGUUCUGUGAUUUGUUUGAUUGGGGAUUGGGAUUGAUUCUAGUGAUGUUAGUGAUGUUUGUUGUUCUGUGAAAGAUUUUAGUGAUUUGUUUGAUGCGGGGUGGAUGAGCUCGGCUCGAUGCAUCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

177

LEP:

35.98%

ME_num:

115

MEP:

23.37%

HE_num:

199

HEP:

40.45%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.86

Avg Expression:

30.22

Tip: OSA-LNCN1622 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-8.38782429471371.58208320956645e-09
2Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 8_days_after_shift1.693119933399890.0246672244347048
3Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.272328018494632.24383358417552e-26
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day2.798475017652082.20947435327921e-10
5WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-7.719670216964046.84431645357897e-05
6Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated-1.096760028435940.0463927042748554
7Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.810375612527074.86691662575713e-06
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.161675106218490.0491830500475899