Chr:
Chr11
Start:
14032511
End:
14033391
Strand:
.
Ref_name:
OSA-LNCN1618
Sequence
(OSA-LNCN1618.1):
GCAAGAGGUUCAACCUUGAACCUCUUGCUAACUUUCCUUUGAAUCUAUCUCUCUCACCUAAUUCCUGGGUUUUUCCUGUGGUUCAAUCAAACGGUCAUUCCUGUGUUUUUCCUGUGUUUUGCAAUCCUCUGUUUUAAACUUACAUUCCUAUCAAAAUCCUACAUUUUUACUAUUUCUACGUAUUCUCAAUCCUACGAUUCAAAGGGGCCCUUAAUAGUUCUGGUGCUGGAGAGGACUCUAGAAAGCAACAAUUUAAGCUAAAAAACUGAAAAACAGACCAUUAUAAGCUAGAACUAAAAGCAGCCAGGGGCAAACGCAUGGAUUUGAAUUGAUUGGGAAGAACAGUCAAGAAAAAAGUGUCCUUACGCCAUGGCACGUUGGGAAGAAUAAUCAAGUCACAUUGUCCUUACGCCCCGCCACCAAGAAUAUGUCUCCAUGUGAUCCUCAAAUUCCUUUCCUAGUUCAAGUAGAUUCAAGUGCUCAGAAUAUUGAGGUUUCAUUAUUUCUCUGAUAAAAAUCCUAUGUUACAUUAAUCUCGUUUGCACCAGAACUCAAAGGAGUAUCCAUUUAAUUUGAGGGUUAAAUUUAAUAGAUCGAAGAGUCCUGUGGCAUGGUAUGAUUACUUGACACGACAUCAGUGAAGAGCCAAUUCCACGAUUUGCCAUCAACAGAGCACACUUCACUUUGCCAUGGGCAAGCCAACUUCAUGCCUACCAUGCCAUUGCUUUCAUGUGCCUCCAUUUACAGUCUGGUUAGGUGGGAAAAAUCGACCAAUUUGUCCCUGCUCAACAUUCUAAGUUCGGGACUUAAAAUGUACUACUUCCGUCCUAGCACCGUACAUUGUCCCAAAAUAAAACUAUUUCUUCACCUACCUUCUCCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.82%
ME_num:
MEP:
10.57%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
1.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.75913572110548 | 3.35998833855985e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.34978847473305 | 0.000124341208647644 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.13585742868902 | 1.34267440949671e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.29630025317449 | 0.000339669161099319 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.53014059369502 | 7.32103666368739e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.0062374943388 | 3.6226607756632e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.07892939440848 | 0.00073276034459519 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.53535381553672 | 6.35077851831453e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.34148928074182 | 0.000338062595367599 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.86079362596604 | 0.00408420442166837 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.06176118509503 | 3.51235378805774e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.29904441450271 | 1.33518483430269e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.12102381395696 | 2.202244253205e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.69775052047617 | 6.69276716876813e-09 |