RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1611

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

13631312

End:

13632733

Strand:

+

Ref_name:

OSA-LNCN1611

Sequence
(OSA-LNCN1611.1):

UGGGCGGAGAGGACGAGCCAUGGGCGGAGAUCGAGAGGACUAAGGCGCACAGGUCACUUAAUAAAUUCAUCUCCUUCUAUUCCUCCUCUUCAUCUCCCAUCUCUUCCUCCUCUUCUCUUCAUUCUCUUCCUGUUCCUCUUCUUCCUCCUCCCAUCUCUUCGUCUUCCUCCUCUGGAUCCGCCCCCUCCCCUCUCCUCCCCACCUCUCAGACGGUCGGGCCACGGCGGCCAGGCGGCGCGGAGGCGGCCUCGCGCGGCGGCCUGGCGGCAGCGAAUCUGGGAGGGGAGGCGGCCGGCCGCCGCUGGAUCCGAGAGGGGCAGAUCUGCACGUAUUUUUUUUCUUUUUUCUUCUCUGUGUUGAAUGCAAUCUGUGAUGAGGAUGUUGAAUGAUUCAAUCUGUGUUAAUUCGAUCUAUGCUGCGAAUGAACUAUAUUAUUAUGAAUGAUUUGGGACGAAGUUGUUGUGAAUGAUUUGGGUUGAGAAUGUUGUGUUGAUUUGGGAUGAAGUUGCAAGUUGUUGUGUUGAUUUGGGAUGAAGUUGCUGUGAAUGAUUUGAGAUAAUGGGCGUGAGCUAAAAAAAAUAGCAAAAAAAAAAAACUUAGUCCUGAUUGGUGUUACAAACCAGGACUAACGAUACUAUAUCUUUAGUCGAUCUUUAGUCCCGGGUGUUUGAACCCGGAUUUGUAAUCCCGGUUUGAAAACCGGGACUAAAGGAAAUUACCAACUGGGAGUAUAAACCAUCUCUCCACCAGUGAAUGUAAGAGAACACAGCCACAGGUUAUUUCAUAUGGGGUCAGAUAGCCAUGUCUCUUGCAGUACCUAGUUAGAGGACACUAACAAAUAGAUGAGUUUCCAUUAUUGAUAUCCCCCAAAAGAUAAUCUUCUCCGUGUCCCAAGAACAGCUCAUAAUGGCUGUGACUAAAUACUCAGACCCAAAGUGCUAAUAUCAUGUUUAAACAUGAAAAUGGUCACUAGAUCCAAAAAAUAAAUUACAAUUACACCCAAAGUGCAUAAGUCCAAAGCAUAAUUUUGUAACCAGUUUGAAAACAUAAAUAUUCUAUAUUGUCAGAGCAGCAAAUAAAUCCUCUUGUACUCAGACCAUGUCCUUCUCCUAUGGCAGUCUAGUAGCUUUGAGUAUUGACCUUGGAUCCAUUCUGUCACCCUGGCGACCUUGGACCAUGUACUUCCAUUGUUUUCCUUCAUCAAAUGUGUCAACUGUCAAGAAAAUUAAAG

Sequence
(OSA-LNCN1611.2):

UUCAUCUCCUUCUAUUCCUCCUCUUCAUCUCCCAUCUCUUCCUCCUCUUCUCUUCAUUCUCUUCCUGUUCCUCUUCUUCCUCCUCCCAUCUCUUCGUCUUCCUCCUCUGGAUCCGCCCCCUCCCCUCUCCUCCCCACCUCUCAGACGGUCGGGCCACGGCGGCCAGGCGGCUGGCUGUCCUCUUCUCUUCAUUCUCUUCCUGUUCCUCUUCUUCCUCCUCCCAUCUCUUCGUCUUCCUCCUCUGGAUCCGCCCCCUCCCCUCUCCUCCCCACCUCUCAGACGGUCGGGCCACGGCGGCCGGGCGGCACGAAGGCGGCCUCGCGCGGCGGCCUGGCGGCAGCGAAUCUGGGAGGGGAGGCGGCCGGCCGCCGCUGGAUCCGAGAGGGGCAGAUCUGCACGUAUUUUUUUUCUUUUUUCUUCUCUGUGUUGAAUGCAAUCUGUGAUGAGGAUGUUGAAUGAUUCAAUCUGUGUUAAUUCGAUCUAUGCUGCGAAUGAACUAUAUUAUUAUGAAUGAUUUGGGACGAAGUUGUUGUGAAUGAUUUGGGUUGAGAAUGUUGUGUUGAUUUGGGAUGAAGUUGCAAGUUGUUGUGUUGAUUUGGGAUGAAGUUGCUGUGAAUGAUUUGAGAUAAUGGGCGUGAGCUAAAAAAAAUAGCAAAAAAAAAAAACUUAGUCCUGAUUGGUGUUACAAACCAGGACUAACGAUACUAUAUCUUUAGUCGAUCUUUAGUCCCGGGUGUUUGAACCCGGAUUUGUAAUCCCGGUUUGAAAACCGGGACUAAAGGAAAUUACCAACUGGGAGUAUAAACCAUCUCUCCACCAGUGAAUGUAAGAGAACACAGCCACAGGUUAUUUCAUAUGGGGUCAGAUAGCCAUGUCUCUUGCAGUACCUAGUUAGAGGACACUAACAAAUAGAUGAGUUUCCAUUAUUGAUAUCCCCCAAAAGAUAAUCUUCUCCGUGUCCCAAGAACAGCUCAUAAUGGCUGUGACUAAAUACUCAGACCCAAAGUGCUAAUAUCAUGUUUAAACAUGAAAAUGGUCACUAGAUCCAAAAAAUAAAUUACAAUUACACCCAAAGUGCAUAAGUCCAAAGCAUAAUUUUGUAACCAGUUUGAAAACAUAAAUAUUCUAUAUUGUCAGAGCAGCAAAUAAAUCCUCUUGUACUCAGACCAUGUCCUUCUCCUAUGGCAGUCUAGUAGCUUUGAGUAUUGACCUUGGAUCCAUUCUGUCACCCUGGCGACCUUGGACCAUGUACUUCCAUUGUUUUCCUUCAUCAAAUGUGUCAACUGUCAAGAAAAUUAAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

153

LEP:

31.1%

ME_num:

202

MEP:

41.06%

HE_num:

136

HEP:

27.64%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.62

Avg Expression:

9.65

Tip: OSA-LNCN1611 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.291804851375940.00127110826620387
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.330766357602670.000248959468930579
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.467770869670372.95561984317472e-05
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.54446124052640.000405628380979098
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.340887718286880.00088752314356679
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.171071671565030.00160079384613945
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.221619689377650.000385411749756308
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.114749488937960.000687126822511895