Chr:
Chr11
Start:
12567091
End:
12569577
Strand:
+
Ref_name:
OSA-LNCN1593
Sequence
(OSA-LNCN1593.1):
CCCACUCCUCUCCUUUCUCUCUCUCUUCUUCAGCCCGAGCCGCGGCUGUCUCUCGCAGCGAAGUCUGCUUUGUCUCCCUCUUCCAAUCGGGCCGAGAAAGAAAGCCCAGCAAGAAGUCUGUUUUGUGUCCCUCUACUACAGUGUCACCCCCAACCUCCAGACUCCCUGCCGAGCCGUGUGUGCAGCCGCUACCACCGCCAAAUCCGUCGCAUCUUGUGUCCCAUUUCCGAAAUUGAUUGAGGGGAUUUGUUGCCCUUAUCCUCCUCUUUCUUUUCCCUCAAGAAUCGGAGCAAAUCCCGUGGUAUAUCGCAUGGAUUCGAAGUGGAGUUUAUCUUCUAUUUUGCCGGCGAACCCUAGCCCUUCCGCCGUCGAUUCCCCUUGUAUCCGAGCCGAUCUCCUCCUCCUUUGGCUAUAAAUAGCAUGCCUCGGGCCUCCUCUUCCGUUUCCUCCUUUUUUCCCGAAUUUUUCCCUAGACCUAGAGCCGCCGCCACGCUCGGCUUCUCUCUCCUUUGCCGGCAGCCGCUCCUGCCACGUCGUGCCGCCUCUUCGGUUGUCCCUGACCUGCGCCGUCGCUUCCCUCGGCUUCGCAGUGAAGAGCUCUACCCCGGCCACCCGUUCCUUUCCUCCAAAUCCUGCCGGAAGUCUCCGUCACCGUGAAGGCCGUGCCGUUCAUCUUCCGUCACCGCGUUUUCAGCAGUGCCGCUCAUCGUCGUCCAUCGCCGCCUUCGCUCGCUGUCGCCACCCAUGGGAUCGCAGGAGCGAGGUGAAGACCGUCCGCCCCUCGUUUGCUGUCUCCCCUCGCCGAAAUGCCACCGUCACCGUGGACAGAGCCACGCCGCCGUCUCAAUCUCAUCGCCGGUCAUCUCCCGUCGUCGUCCGUGGUCGUGCCGCCCCUGGGUUUAGUUUUCCGUUGUUUUGGAGGAUCGUUCGUUCGUUGGAGAAGUUCCUAAAGACGAAUUGAAGACGCUUGUUUGCAAGUUGAAGAAAAAGGAUCAAGAAGGAGAAGACCUCUGGCUUAAAUCCCUGAUGAGCUGCCUGUGGGAGUGGAGCUGAAGCUUCGCUAGAUUUUGUUUUCCGCUGCAGUUUUCUUCAUGGUGAGGACUAAGUGCCUCUUAUGUAAGUAUUUAUCGUUUUAGUUAUUUUGAUGAAUCUGUAUAUUAAAUUGUCAGUUUGUAUCCCUCGGCUGAUUCUUAGACGAGGGUUUUAAUGCACAAAUUAGUUCGUAAAUUACUUGUGAAUUUCUG
Sequence
(OSA-LNCN1593.2):
CAACGCCUGUUUUUCUUUUCCAAAUAAAUCGUUUAGUUUUCCGUUGUUUUGGAGGAUCGUUCGUUCGUUGGAGAAGUUCCUAAAGACGAAUUGAAGACGCUUGUUUGCAAGGCAAGUCACACAGAUCCCAAACAACCCUUAAUGGGAUAAAUCAUGCUUCACUAUUACUUAUGGUUAUAUUUAAUGGUAGCUCACGAUGGUGAAUCGUGUUAUGAGAAUUAAUUGAUAAUUAAAAUCUGAUUAAUGGUGGGUUGUGAGCACAUGGUUUUGAAGGUCAUGCUCAUGACAAUUAAGGACCGGUUCGCGAGCUACGGUUGUGAAACAUUAACCGUGCCAACCACAAGCCAGCAUGGGCAACGACUUUACCUUUUGUAUAGCAUGGUUCAUUACAGGGUGCUAGACUGAGAAGCGGCGAGAAGUCCGUGGGGGUCGCUGGGGAGUCAAGUCCUCUGCUUUUUGAGGGGGUGAUUAUGAUCUAGGUAUGGUGCACUGUGGUGAGUUGUGUUGUGCGAGGGGUAUUGUCACAGGUCCUUUCUGAGGUACCGUGGUGGUAUUGAGGCGCAUGGUGACAUGUCGUGGAGCUGUGUCUUGUGUGUAUAGUGGUACAUCUCUGGUCAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGGGUCUAACAAUGUUUUUCGUGAUUAGUCCCACACUAGUCAUUAAUGACAACAAUGUGAUAAUUAAUUUGACUCCUGAUUUGGAAUGGAUAAUUCCUGGUUUGGAGGUUUGAUCUGUACGACCGGGGUUUGUUGUUCAAGUUUGGAUGGGCCUGUGUAGCAUUGGGGUGCUGUUCAGUGUUGAUUAAUAUGAAUGAUUAAUUACUCUACUGUUUUGCAAAUUCUCAACUCUUUGCUAAAUGAUGCUUUCGCAAAUGAAUCCUAUAUUAUGCCAUCCUUUGGUAUCUAUGUGCACUUGCAUACUUGCUGUGUGGCUUGCGGAGUAUUCCAUGCACUCACCUUGCAAUAAUCAUCAAACCUCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
55.69%
ME_num:
MEP:
42.28%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
2.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -5.64335894265725 | 0.00317553515754426 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.59713781247608 | 0.0307152776774708 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.53297120050185 | 0.0389064179574664 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.74330303037478 | 0.00142072370937657 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.46652442567553 | 0.0149792621504004 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.79943984808965 | 0.00155706061280952 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.47109443036047 | 1.33767612527746e-05 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.80988734149311 | 0.0241469932718029 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.48078649597941 | 0.0372207568170145 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.69504164222448 | 0.00555175191047533 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.16900033789787 | 0.0406988579046193 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.03924515515748 | 0.00203768785368431 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.94061412317279 | 0.000970190296899815 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.56607720565346 | 0.00390778857692315 |