Chr:
Chr11
Start:
11591476
End:
11596163
Strand:
-
Ref_name:
OSA-LNCN1572
Sequence
(OSA-LNCN1572.1):
GUUCGUUAUCCGCGCUAAUCCUAUUUUACUGUAAAGUUGAUGCGCACUAACUUCUAAAGUUCAACAUAUCAUUGUGCCACAUUAUCACCAACUAUCAAUUAUUAUCUAGAGUAAUUUUAAUCGCAUGCAAGUGUGGUACAUCAUCACCCACUAGCAAUUAUUAUAUAGAGUAUUUUAACUAUUAUGCAAACAUGAUAUAUCAUUAAUGUUAAAAAAACAUGAUAUAUCAUUUAUAAUUUUGUUGUAUUUUUAUAAUUCAAUAUGCAAACAAUGUCAAAUCAAUAUCUCCACAUCAUUUUCACAUUGUCAUCUACCAUUUUUAGAAACGUAUAAUAUGCAUUCAUCCAUAUAUAUAUCCGGUAACAAAGCGUGGGGUAUCAACUAGUUAAAUAGAUCUGGCAACCGAGAGGGGCUUCUUUUUGAGCUAGAAUGAUGAACUACAUGCUUAACAUACCACUAGUAUGCGUAUUUUACCCGUAUUGGAUAUAAAUGUCCCCGUCUUCAACCUCCUCCCUCUCCCUGCGCUAGAGUUGUUCUAUGCCUGGUGCCCAAGCCACCCGGAGCAUGGGAACCUUUCUUCCCUACCUCCGGCCGAGUGCUGCCGUGGUCGGCCUCGCUGUUCAUCCCCACUCUCCCCGUCCAAAAGGUAUAAUCAAGCUCAGCCAUGGAGAAUGAGGCAACCACGAGCUUGUCCAGCCUCGCCGGAGAACCUGUCAGAGCCCUUGUUGGGACGAGGCCAGGGGCAGCAAUUUCUUCGACGGAAGCUGCAGCGGCUCUAGGGAGAUGGAAGAGGAGGCAAAGGUGAUUUGAUUUCUGUUGGCUGUUGCUCAAAUAGCUGUCGUAUCCCUGUCGUUGGCGGUUGGUCCCCUCGCAUGGACGCAGCCGAAUCCAUUACGCCCGACUGCCCUCGCGACCGGCCCACAGUGCCGCCCGUCUUCGCCGGAGAGAGAGGUGCCGCCAAGCUCCGCCGCCAAGGAGAGCUGCUACUCGUAGGGGAGAGAGAGAGAACGCUCCGGCCUGCUCUUGCUCACCGAGGGAGAGAGGUUGAGGAUGGGGGCAUGUCAAGGAUAUGUGAACUGUGUAUGUCAAUGGCACCAUUACAACAACAAAGAAACAUUAGUGAUAUGAUUCUAAAUACAUGAAUUGUAAUGGUAAAUUUCAAAACUGAGAAAUUUAUAAUGGCAUGUAUCCAAUUAACCGUAAAAUUUAUAGGUAUGUGGGUGUGAACACCAUUAAUCCCACGAGUGAUUAGAUGAGUAGGAGUCUGAGUUCCCUUAGUUUAUUUAAGUAAUAGAUACAACCCCCGUGGAAGAAGGGGUUGCGUAGUUAGCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.36%
ME_num:
MEP:
15.04%
HE_num:
HEP:
12.4%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.95
Avg Expression:
16.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.47310218345816 | 3.38387775849048e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.0284811610511 | 1.99240672797692e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.05444531035935 | 1.50385060643579e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.87721746638616 | 1.37119640495137e-05 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.00305627931401 | 0.00724048056363684 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.64037854728087 | 0.000201013033012817 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.02614762784391 | 1.5957703948275e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.87715642657389 | 0.00124318102610702 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.91730438684068 | 1.88472892817973e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.39666300918226 | 3.00793465465371e-07 |