RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1568

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

11091426

End:

11100978

Strand:

+

Ref_name:

OSA-LNCN1568

Sequence
(OSA-LNCN1568.1):

UCUUAAGGAGCAAUUCUUUCUUCCACUUUGUAUUAUCUAUAGUUUCUAUUAGGAAUAAUGCUUAGGAGUUUCAGUCCUAUAGUCCUCUCGGAGUUCUGGGCACCCAACCGUCCGAAAAUUUCCGACAGGCGGUUUCAUUAAUUCGAAUCGUCAACGACCCAAUCGAACGCCGGCGAACGAACAUAUAUGGAGAUUCUUCUUAUUUCCAGCUGCAACUAUCAUCGAUCGACGUGGUGCUUGACCAUUUCGGCAUGAUCGAGUGUGCAUGUGGUCAGAUCGGCGCCGCAUAUAUGUGUCCUCUCGCGUGAAAGUCAUAUGCAUGGUGGGUGUGUGACUGACUGAUCGAUAUAUGCUCGAUGAGCUGACGGGGCCUGACGGGUUGGAUUGGGCGGCACCGAGAUGGCGAGAUGUUGUACCGUCCCAAGCAAGGAAUUCUACUAGCUGAGUAGUACUUUCCGGCUGGCCAUGCAUGGCAUUUGCAACACACACAUGCUUUCUUUCUUUCUUUUGCUUGUGCCCAAUUGCCCAAAUAUUUAGUGGGGAAAAUAUCCAGUGAAAACAUGUGGAAAACAUACUCAAAAGCUCUUUAAAUUUAUGAAAA

Sequence
(OSA-LNCN1568.2):

GAGCAAUUCUUUCUUCCACUUUGUAUUAUCUAUAGUUUCUAUUAGGAAUAAUGCUUAGGAGUUUCAGUCCUAUAGUCCUCUCGGAGUUCUGGGCACCCAACCGUCCGAAAAUUUCCGACAGGCGGUUUCAUUAAUUCGAAUCGUCAACGACCCAAUCGAACGCCGGCGAACGAACAUAUAUGGAGAUUCUUCUUAUUUCCAGCUGCAACUAUCAUCGAUCGACGUGGUGCUUGACCAUUUCGGCAUGAUCGAGUGUGCAUGUGGUCAGGUAGGGACAUGUGUCCAAUGAUUGGAGAAUUAUUGACAUCUCUCUGCAAAUAUAAUGGACAACUAGUGGCUCACUCAACUUGGGGGAUCGGCGCCGCAUAUAUGUGUCCUCUCGCGUGAAAGUCAUAUGCAUGGUGGGUGUGUGACUGACUGAUCGAUAUAUGCUCGAUGAGCUGACGGGGCCUGACGGGUUGGAUUGGGCGGCACCGAGAUGGCGAGAUGUUGUACCGUCCCAAGCAAGGAAUUCUACUAGCUGAGUAGUACUUUCCGGCUGGCCAUGCAUGGCAUUUGCAACACACACAUGCUUUCUUUCUUUCUUUUGCUUGUGCCCAAUUGCCCAAAUAUUUAGUGGGGAAAAUAUCCAGUGAAAACAUGUGGAAAACAUACUCAAAAGCUCUUUAAAUUUAUGAAAA

Sequence
(OSA-LNCN1568.3):

GAGCAAUUCUUUCUUCCACUUUGUAUUAUCUAUAGUUUCUAUUAGGAAUAAUGCUUAGGAGUUUCAGUCCUAUAGUCCUCUCGGAGUUCUGGGCACCCAACCGUCCGAAAAUUUCCGACAGGCGGUUUCAUUAAUUCGAAUCGUCAACGACCCAAUCGAACGCCGGCGAACGAACAUAUAUGGAGAUUCUUCUUAUUUCCAGCUGCAACUAUCAUCGAUCGACGUGGUGCUUGACCAUUUCGGCAUGAUCGAGUGUGCAUGUGGUCAGGCCCUUGGUUGCAGGCAAAGCGAAAAACACUCAUGCAAACGGGUUAUGUGUCACCUAAACAAACAUUUUCUGUAAUAGUGUACAAGGCCUCCCAUUUCUUGAAUGCACAAGGAUGCCAUUGGCAGAUUAAUUAACGAGAUUCAAAAUUUCAUGACAAAUUCUUGCUGAUUCCAUAUAUCAAGAA

Sequence
(OSA-LNCN1568.4):

GCAAUUCUUUCUUCCACUUUGUAUUAUCUAUAGUUUCUAUUAGGAAUAAUGCUUAGGAGUUUCAGUCCUAUAGUCCUCUCGGAGUUCUGGUGUUUGAGGCAGGCACCCAACCGUCCGAAAAUUUCCGACAGGCGGUUUCAUUAAUUCGAAUCGUCAACGACCCAAUCGAACGCCGGCGAACGAACAUAUAUGGAGAUUCUUCUUAUUUCCAGCUGCAACUAUCAUCGAUCGACGUGGUGCUUGACCAUUUCGGCAUGAUCGAGUGUGCAUGUGGUCAGGUAGGGACAUGUGUCCAAUGAUUGGAGAAUUAUUGACAUCUCUCUGCAAAUAUAAUGGACAACUAGUGGCUCACUCAACUUGGGGGAUCGGCGCCGCAUAUAUGUGUCCUCUCGCGUGAAAGUCAUAUGCAUGGUGGGUGUGUGACUGACUGAUCGAUAUAUGCUCGAUGAGCUGACGGGGCCUGACGGGUUGGAUUGGGCGGCACCGAGAUGGCGAGAUGUUGUACCGUCCCAAGCAAGGAAUUCUACUAGCUGAGUAGUACUUUCCGGCUGGCCAUGCAUGGCAUUUGCAACACACACAUGCUUUCUUUCUUUCUUUUGCUUGUGCCCAAUUGCCCAAAUAUUUAGUGGGGAAAAUAUCCAGUGAAAACAUGUGGAAAACAUACUCAAAAGCUCUUUAAAUUUAUGAAAA

Sequence
(OSA-LNCN1568.5):

AAUUCUUUCUUCCACUUUGUAUUAUCUAUAGUUUCUAUUAGGAAUAAUGCUUAGGAGUUUCAGUCCUAUAGUCCUCUCGGAGUUCUGGGCACCCAACCGUCCGAAAAUUUCCGACAGGCGGUUUCAUUAAUUCGAAUCGUCAACGACCCAAUCGAACGCCGGCGAACGAACAUAUAUGGAGAUUCUUCUUAUUUCCAGCUGCAACUAUCAUCGAUCGACGUGGUGCUUGACCAUUUCGGCAUGAUCGAGUGUGCAUGUGGUCAGUUCAAUUCAGAUUUGAUUGCGCAUGCCAGUGCUGCCACUAGCUAGAUCUCGUAUGUGCGCCU

Sequence
(OSA-LNCN1568.6):

UCUUUCUUCCACUUUGUAUUAUCUAUAGUUUCUAUUAGGAAUAAUGCUUAGGAGUUUCAGUCCUAUAGUCCUCUCGGAGUUCUGGGCACCCAACCGUCCGAAAAUUUCCGACAGGCGGUUUCAUUAAUUCGAAUCGUCAACGACCCAAUCGAACGCCGGCGAACGAACAUAUAUGGAGAUUCUUCUUAUUUCCAGCUGCAACUAUCAUCGAUCGACGUGGUGCUUGACCAUUUCGGCAUGAUCGAGUGUGCAUGUGGUCAGAUUAAAUCUCAGUGAAUAUAGUGGACUUGCUACACGAGAAGUUUUUGUUUUUAAUGAUGUAAACAUUAGAGAACUUUUACUAUAAUAUACUGCCAGUAUAUUAUAUAUAGAUGGACAAAUUAAACUAGGAAUUUUAUAGAAUUUGAAAGGGCUUUCUAGUAAUUCUAUGGUUUUAAUCCAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

452

LEP:

91.87%

ME_num:

29

MEP:

5.89%

HE_num:

10

HEP:

2.03%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.97

Avg Expression:

3.34

Tip: OSA-LNCN1568 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs4.749848903686590.00668931184657373