Chr:
Chr11
Start:
9874729
End:
9875735
Strand:
.
Ref_name:
OSA-LNCN1537
Sequence
(OSA-LNCN1537.1):
GCGAAUAAAAUGUCAUUACAGAGGUGGAUAGUUCCUCUCAAUCAAUAAAGAUCUAAGCAGCGGAAAAUAAAAUAAACGGCGCAGACGACUCCACUCCACAGGCAACUUGACCAGCGCUACACCUAAUCCUCCACACCAUCAGCAUCAUUGUAGAACUCUUCCUCUGAUGAAUGAUUGCAAGGUGAGUAUAUGACAUACUCAGCAAGUCACGCAGCAAAUAUGCAAGUGCACAAGGAUACCAAAGAAUGGCAUAGUAUAGGGCUCAUUUGCAAAAGCAGCCUUUAGCAAAUAUUUGAGAAUUAUAAAACAGUUAAGUGAUAAUUAAACAAUAUUAAUCCAACGCUAUACAACAUACCCUGUUGCAUAGGCCCAACCAUUCUGGACAACCAUACCCGGCUGUACAGAUCUAUCUCCAAACCAGGAAUAUUCCAUUCCAAACCAGGAGCUAAACAAAUUAUUACCAAUUAAAGCAUCAUUUACUAUGGUGAGAAGUGUGAGACUAAUCACGAAAGACAUUGUUAGACCCGCCCAUAACCGCGGGCACGGCUAUUCGAAUAGUUUUACUCUGAUCAGAGGCGUACCACUGUACCCACAAGACACAGCCCCACAUCAUGUCACCAUGUGCCUCAAUACCACCACGGUACCUCGGAAAGGAGCUGUGACAAUACCCCUUGCCUAACACAAUCCACCACAGCGCACCAUUUCUGGAUCAUAAUCACCCCCUUAUAAACAAGGCAUGGACUCCCCAGCGACCCCCCCGUGGGCUUAUCUCCGCCACUUCUCAGUCUGGUGCUCCGCAAUGAACCAUGCUAUACAAAAGAUAAAGCCGUUGCCCACGCUGGCUUGUGGUUGGCACGAUUAAUGUUUCACAACCGAAACUCGUGAACCGGUCCUUAAUUGCCAUGAGCACGACCUUCAAAACCAUGUGCUCACAACCCACCAUUGACAAGUUUUAAUUAUCAAUUAAUUAUCAUAACACGAUUAACCAUCGUGAGCUACCAUUAAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.89%
ME_num:
MEP:
17.68%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.95
Avg Expression:
5.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.04863055485217 | 0.00439973940685376 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.14251358869688 | 0.00263865684233871 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.29329787229839 | 0.0017829235632327 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.58547424992566 | 0.0438095919218563 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.43029881124807 | 0.00717338547280739 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.63690638807316 | 0.0383922384390419 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.13889697602087 | 0.0114079393018707 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.57733595245793 | 0.000750488210173249 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.99610863412101 | 0.0231795721000404 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.0052848598029 | 0.0045875995605986 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.82337448190705 | 0.00727239086409464 |