Chr:
Chr11
Start:
8720141
End:
8721463
Strand:
.
Ref_name:
OSA-LNCN1495
Sequence
(OSA-LNCN1495.1):
CCGUUCCCAGCGGCGGUAUGUAGCUUCGACCAACGGAGGUGGCGAGCCUCCAGGCGCAUGCGAUGGGCUUGGAAUGGUGGUGGAAGCGAUGGCACUGGUCAUAGGACCUGCUCAUCCUUGGUGGAAGCCUCGAGAGGCGAAUCUUCUAGAGAUGACUAGGGAUCGGACGUCCGAUCCCAGUCAAAACUUCGGACGGUGUUUCACCGUAUAUAGAAAAAUGUUUCACAUGUUUUAGCAUUAACUAAAAAAUGUUCCAGCAAAAAUGUUUCAGAUGUUUCCUUAUCCAAUGAAAAAUGUUUCAUCACGUGGUUAAAAAUAUUCCAAUUAUAUGCAACAUUUAAAGAUGCUGAUAGUAACACCGAAAACACCAUUGUGUGCAACAUCUAAUUAGAAAAGAUGAAACACAUUGGAAUCAAAGAUUGAAACAUUUAUGUCUUACACAUGAAACAACAAGUUUAUACUGUUGAAACAUCAAAGGAUCCUCAAGAAUCAAUGAUAAAAAUGUGAAACACCAUUAAAAUACGCAUUGAAACAUUUCGAUUUAACACAGAGAAACAUUGAGAAACAUCAAUGGAUCCUCAAGAAUCGAUGAUAAAAAUGUGAAACACUACUAAAAUACGCAGUGAAACAUUUCGAUUUAACACAGAGAAACAUUGAGACAAAAUAGACUGGAACAUUGAAAAAUCACAUUAGUUUACCCCAUUCUAGAUUUGGCUUCUUCCUCCAUCCCGGUGGCCAAAAUCUUCAACGGUGCCGGAAUGCCGUGCUCCCUCGGCCACGGCCUCGGCCACCACCACGACUACGAAUUCCGCCGGCGUGGCCUCCUCCCCAUAGCCUCCGCGGCGGCAAUGCUCCUGCUCCUCGCACUUCUCAUCCCUCUCCCUCCACCACCUCCGCGCCACGGCCGCCUUCGUCGACUCCGGCGACCCGCCCACCACGCUCCAUCUCGCCGUUGUCCAGUUGUCUCUGCGCAGGUCCGCGCGAGAGGCCCCACCGAGUGGCCGGCGGCAGCGAGGAGGAGGGCACCACGACGGCCGCGGCCAUGGGCGGCGCGGCGGACGCAAGGCCGUCGUCGUCCGGUGAGGACGCCGUCUCCUGCUUCAGUAUCUCCAUUGACAUGAGAGAGAGAAGGGGGAAGGGGAAGAGAUAAGGUUGGAGCGGUCGAGCGGAGUGUUGCGAGUCACCGGCGGCGCCAAAAUCCGGCCACCCACGACGGCAGCCCCGCCGUCUGCGGCGGUGGCGGCGCCGGCGCCGGCGCCUGAUGACACCGCGGCCACGUGUGUAGCAUGGGACGCCGUGAAGAAGUUGAACACUUGAACGAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.33%
ME_num:
MEP:
2.64%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
9.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.09466879694656 | 0.026274625333112 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.21494760066788 | 0.0166852147385391 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.7979848173782 | 0.000396336489579264 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.80479074416633 | 0.0110120098769748 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.04974091191045 | 0.00350268499934804 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.21670444541835 | 0.00244529884856631 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.9435199527441 | 0.00205219910521853 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.61177265087875 | 0.000503732201273216 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.43010591923618 | 0.023349705309734 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.54435101153179 | 0.00629280262658595 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.26163520996492 | 0.000715890539044552 |