Chr:
Chr11
Start:
7889066
End:
7889594
Strand:
.
Ref_name:
OSA-LNCN1485
Sequence
(OSA-LNCN1485.1):
AAUAUAUGAUCCCACCUAUUAUAUGCACAUUACGUCUUGUAGUCCGUGCUAUAGCUGACUACGAAUUUGUAGCCCGCUGUUCUUCUCUCUCAUCUUUUAUCUUACUAAAAUAUAUUUAUAGCUAGCUAUUAGUCUGCUAUUAUACUCUCUCUAAGAGAAUCUUUAGAUUUUUUUUUUUUGAGAGCUCUCCACUUUGAGUACAAGCUGUAGUAUCUGAACAUACGUGCAAACGCACUCCACCACGCACACACACCCACACCCCUACACGCAUGCUAGACCUAUCAACUAUACACACACGUACUAAUGAGAUACACAAAGCCACCUAAGAACCUUGUGUGUGACGAGGACGUCACUCUACUAUUGUGGCGCUGGCACGGGAGAGCUGGAAAUUUAUUUGGGAAUAAAUCCCGGUGAGACACGCGGGUGACGAUCCCAGGGAUCGAACCCGCGCGGGCUGCUCGCUCACCAGCGAAGCUAGCCAACCGAGCAACGCUCGGUUCUCAGAGAAUCUUUAGAUCUCAUAACAUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.09%
ME_num:
MEP:
54.67%
HE_num:
HEP:
27.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.86
Avg Expression:
36.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.98865003924224 | 0.000250110272201168 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.14374453365123 | 0.0221624613131069 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.19337953537356 | 1.17829481313267e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.23151445069242 | 2.43852340431998e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.88655629698223 | 1.83422468588681e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.29543186070719 | 4.16921218133856e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.35858371478499 | 0.00752161876693388 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.23829299638177 | 0.0197149243830362 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.07352504174235 | 0.0202895252360012 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.24170188730577 | 1.48329607510309e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.08647944055129 | 3.86533598313453e-08 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.48770234237918 | 0.0213349761642593 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.41091628211524 | 4.24406647291763e-05 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.72916760985511 | 0.0215298858601475 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.14650864961757 | 7.8873266365477e-11 |