Chr:
Chr11
Start:
7757799
End:
7762042
Strand:
+
Ref_name:
OSA-LNCN1481
Sequence
(OSA-LNCN1481.1):
AUUUGCUAUGGAGAAUCCUUGGACUCUGCUAACUAUGACAGUACACAUCCCAGAGAACUUAAGCCAACUGUUGAAGGCAGAAACUUGGAUCGCCCACGGCAACUUUAAUUCAGGGAAUUUUCCACCACAAACCACCAGCCUGUCCAAGAACUGAAAUGGUGCUCAGGGCCAACCCGUACUUGAGUCAAACUGAAGCUAAACUGUCAUGCUCCGCACUGAGCUGACCGUGGAAAGUAUUCUGCUUGAGAUCAACCAACUAGACCAAGUUUUCCAGCGCGCCGCGUGUGUGGAAGGGGGACCAAAAAGAAAAAAAUUCACAUUUUUGUACCGGAAACGAAUCCAGGAACCCUAGCAUCAUCAUCAUCAUCCUAGCGUGAUCAGGACCGAAUUCGCGGAAUGGGAGCUCUACCCCCAAAUCAAACACAAGCUUCAAAUCAAACCACAAGCUUUGCUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.07%
ME_num:
MEP:
7.32%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.88
Avg Expression:
1.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.95735952176389 | 2.67250589284848e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 6.37700258943605 | 2.39213284813591e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.68588217366021 | 5.09310980932107e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.68640133560711 | 0.000124798532737494 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.46612877646252 | 0.0130623252107279 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.27285655856772 | 0.000376238877153389 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.98322871996566 | 0.000589347649088181 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.39005873532505 | 0.00820746590087092 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.70926014723084 | 3.33173240997688e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.81742402543573 | 4.5446519415127e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.27196357020602 | 0.000183302712888789 |