Chr:
Chr11
Start:
5467306
End:
5473621
Strand:
+
Ref_name:
OSA-LNCN1437
Sequence
(OSA-LNCN1437.1):
CUUGGAUUCAUUUUUCCAAGGCAUUGGACCUAUGUACAGAGCUAUGUCUCUUAGCAUGUCAUCCACUUUGUACAGCCCUGGGAUGUGGGAUGGUUGUAUGAAUGCCUUCCUCACCAAAUCAUCAAAGUCCAGCGAGGGUAUGUACCCAACACCCCAAAGCAGCGUUGCAGGUGUUUGGGAAGAAGCUUACAACCCAGAAUAAAUGGAGUAACAAACCUGGAACUGGAUGCGACGAACUGCUGACAGCGAUUCAGAACAAUGUACCAGUACUUCUCAUUGAGGGUGUGCACCACCCAGGGCAUUUUCCAUGAACAUGCAGCCGAGAUCUUCCAUUGCCAGGAACCCUACAGGUUCUGCGAAAUGCUUGACUAUGAAGAUGGGAAUGUGCUCAUUGACUAUUUACAUUGGUGUCUGACUCACUAUUUGAUCUUAUCAAUCAUUUCAUUAAUAUGUUUGUGCGCUUUAGAGACAUUAGUUUAGUUGACUGAUUUAGAAUGGAACUGUUAACUAGUAUGUUAAUUGAAACAUUAUUAGGAUAAUCCAAGU
Sequence
(OSA-LNCN1437.2):
GUUGUAUGAAUGCCUUCCUCACCAAAUCAUCAAAGUCCAGCGAGGGUAUGUACCCAACACCCCAAAGCAGCGUUGCAGGUGUUUGGGAAGAAGCUUACAACCCAGAAUAAAUGGAGUAACAAACCUGGAACUGGAUGCGACGAACUGCUGACAGCGAUUCAGAACAAUGUACCAGUACUUCUCAUUGAGGGUGUGCACCACCCAGGGCAUUUUCCAUGAACAUGCAGCCGAGAUCUUCCAUUGCCAGGAACCCUACAGUGUAUCGAGUAUGUCAUUCAUUCCCCUGGGGUAGCUAGAAGCACCAUCAAGAACAAG
Sequence
(OSA-LNCN1437.3):
CAAACCUGGAACUGGAUGCGACGAACUGCUGACAGCGAUUCAGAACAAUGGUGUGCACCACCCAGGGCAUUUUCCAUGAACAUGCAGCCGAGAUCUUCCAUUGCCAGGAACCCUACAGUCUUGCACAAACAGUAUCACUAACUGAAUAUCAUUGCACCCGCUAACUGUUGUCCUCCAGCAUCGGUUCAUGGAUCAAUUGCUUCUUGCAACUGAACACACUGACACAAGAAGUUGAGAGCCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCCCCCACAUUGAUUUAUUUCCCAGUUUUGGAAGCCUGCUAGUUCAGAAUUCAGAAGACAGCUUACCGUGAUUGGUGUAUAUAUCCCUGCUGAUUGCAGGCCAAUGCUGUAGUAGCUGGAAGCCUGAACUUUGAAGUCAAUGCCAAUCUGGAGUUCCAAACCUGAAAUACUCCUAAGCUCUAAGCAACAACAUUCUACAUUCUACAAGUUACCAAUUACCAGCAUCUACUGUCUGCAGAAUUAACAGGGUGUGAUUGAUCAGAUCUGUUAACUAUUGCCUUCAGAGUUCAGACACAGGAGAUCAACAUAGACAUAUUCAUAUACUCUUUGCACAUGCAUUUGCUUUUUCACAGAAGAACAGAUAUGAUCCAUGGCAGGUAGAGUGGUUUAAUGAUCUCUGACGACAUGGGAAGAAUCCUAAGUUUGGGCACCAGUUAAGGUUGCCAACCCCUAAUAGCACCUGACUCCACUGCAUCACCAAUGGAGGCAAUACUUGCCACUGCACAUGUUGCAAAAAUGAUAAGCAAAAGUGGAAUUCAUUCAUGACAGAACCAACAUAGUUUCUUGUUGCUUUCAUGCAUCAUGUGCUGGCAAGGCUGGCUUCAUGAAUCUUGGCUAUGUUUUCAUCCUGUCCAAAAAGAAUCUUGAUGAAUA
Sequence
(OSA-LNCN1437.4):
CUGUCAAACUAUUUUUCUUACCGGCAUUGGUAAUGUUAACAGGUUCUUCUCCCAGACUAAUAUAUUUUUUUACUGAAAUCUCUUUCUCUGCAGUCUUGCACAAACAGUAUCACUAACUGAAUAUCAUUGCACCCGCUAACUGUUGUCCUCCAGCAUCGGUUCAUGGAUCAAUUGCUUCUUGCAACUGAACACACUGACACAAGAAGCCAAUGCUGUAGUAGCUGGAAGCCUGAACUUUGAAGUCAAUGCCAAUCUGGAGUUCCAAACCUGAAAUACUCCUAAGCUCUAAGCAACAACAUUCUACAUUCUACAAGUUACCAAUUACCAGCAUCUACUGUCUGCAGAAUUAACAGGGUGUGAUUGAUCAGAUCUGUUAACUAUUGCCUUCAGAGUUCAGACACAGGAGAUCAACAUAGACAUAUUCAUAUACUCUUUGCACAUGCAUUUGCUUUUUCACAGAAGAACAGAUAUGAUCCAUGGCAGGUAGAGUGGUUUAAUGAUCUCUGACGACAUGGGAAGAAUCCUAAGUUUGGGCACCAGUUAAGGUUGCCAACCCCUAAUAGCACCUGACUCCACUGCAUCACCAAUGGAGGCAAUACUUGCCACUGCACAUGUUGCAAAAAUGAUAAGCAAAAGUGGAAUUCAUUCAUGACAGAACCAACAUAGUUUCUUGUUGCUUUCAUGCAUCAUGUGCUGGCAAGGCUGGCUUCAUGAAUCUUGGCUAUGUUUUCAUCCUGUCCAAAAAGAAUCUUGAUGAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.04%
ME_num:
MEP:
9.15%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.99
Avg Expression:
9.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.11416671860638 | 0.0236474470522165 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.8330537446972 | 0.0188459851075611 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.18176063394758 | 0.0406146953043995 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -3.88201315233501 | 0.0184899937083559 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.48406192627849 | 0.0264209636497964 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.70745439912182 | 0.0103542298668284 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.6122937919852 | 0.00707661301485229 |