OSA-LNCN1437


Function Link


Basic Info

Chr:

Chr11

Start:

5467306

End:

5473621

Strand:

+

Ref_name:

OSA-LNCN1437

Sequence
(OSA-LNCN1437.1):

CUUGGAUUCAUUUUUCCAAGGCAUUGGACCUAUGUACAGAGCUAUGUCUCUUAGCAUGUCAUCCACUUUGUACAGCCCUGGGAUGUGGGAUGGUUGUAUGAAUGCCUUCCUCACCAAAUCAUCAAAGUCCAGCGAGGGUAUGUACCCAACACCCCAAAGCAGCGUUGCAGGUGUUUGGGAAGAAGCUUACAACCCAGAAUAAAUGGAGUAACAAACCUGGAACUGGAUGCGACGAACUGCUGACAGCGAUUCAGAACAAUGUACCAGUACUUCUCAUUGAGGGUGUGCACCACCCAGGGCAUUUUCCAUGAACAUGCAGCCGAGAUCUUCCAUUGCCAGGAACCCUACAGGUUCUGCGAAAUGCUUGACUAUGAAGAUGGGAAUGUGCUCAUUGACUAUUUACAUUGGUGUCUGACUCACUAUUUGAUCUUAUCAAUCAUUUCAUUAAUAUGUUUGUGCGCUUUAGAGACAUUAGUUUAGUUGACUGAUUUAGAAUGGAACUGUUAACUAGUAUGUUAAUUGAAACAUUAUUAGGAUAAUCCAAGU

Sequence
(OSA-LNCN1437.2):

GUUGUAUGAAUGCCUUCCUCACCAAAUCAUCAAAGUCCAGCGAGGGUAUGUACCCAACACCCCAAAGCAGCGUUGCAGGUGUUUGGGAAGAAGCUUACAACCCAGAAUAAAUGGAGUAACAAACCUGGAACUGGAUGCGACGAACUGCUGACAGCGAUUCAGAACAAUGUACCAGUACUUCUCAUUGAGGGUGUGCACCACCCAGGGCAUUUUCCAUGAACAUGCAGCCGAGAUCUUCCAUUGCCAGGAACCCUACAGUGUAUCGAGUAUGUCAUUCAUUCCCCUGGGGUAGCUAGAAGCACCAUCAAGAACAAG

Sequence
(OSA-LNCN1437.3):

CAAACCUGGAACUGGAUGCGACGAACUGCUGACAGCGAUUCAGAACAAUGGUGUGCACCACCCAGGGCAUUUUCCAUGAACAUGCAGCCGAGAUCUUCCAUUGCCAGGAACCCUACAGUCUUGCACAAACAGUAUCACUAACUGAAUAUCAUUGCACCCGCUAACUGUUGUCCUCCAGCAUCGGUUCAUGGAUCAAUUGCUUCUUGCAACUGAACACACUGACACAAGAAGUUGAGAGCCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCCCCCACAUUGAUUUAUUUCCCAGUUUUGGAAGCCUGCUAGUUCAGAAUUCAGAAGACAGCUUACCGUGAUUGGUGUAUAUAUCCCUGCUGAUUGCAGGCCAAUGCUGUAGUAGCUGGAAGCCUGAACUUUGAAGUCAAUGCCAAUCUGGAGUUCCAAACCUGAAAUACUCCUAAGCUCUAAGCAACAACAUUCUACAUUCUACAAGUUACCAAUUACCAGCAUCUACUGUCUGCAGAAUUAACAGGGUGUGAUUGAUCAGAUCUGUUAACUAUUGCCUUCAGAGUUCAGACACAGGAGAUCAACAUAGACAUAUUCAUAUACUCUUUGCACAUGCAUUUGCUUUUUCACAGAAGAACAGAUAUGAUCCAUGGCAGGUAGAGUGGUUUAAUGAUCUCUGACGACAUGGGAAGAAUCCUAAGUUUGGGCACCAGUUAAGGUUGCCAACCCCUAAUAGCACCUGACUCCACUGCAUCACCAAUGGAGGCAAUACUUGCCACUGCACAUGUUGCAAAAAUGAUAAGCAAAAGUGGAAUUCAUUCAUGACAGAACCAACAUAGUUUCUUGUUGCUUUCAUGCAUCAUGUGCUGGCAAGGCUGGCUUCAUGAAUCUUGGCUAUGUUUUCAUCCUGUCCAAAAAGAAUCUUGAUGAAUA

Sequence
(OSA-LNCN1437.4):

CUGUCAAACUAUUUUUCUUACCGGCAUUGGUAAUGUUAACAGGUUCUUCUCCCAGACUAAUAUAUUUUUUUACUGAAAUCUCUUUCUCUGCAGUCUUGCACAAACAGUAUCACUAACUGAAUAUCAUUGCACCCGCUAACUGUUGUCCUCCAGCAUCGGUUCAUGGAUCAAUUGCUUCUUGCAACUGAACACACUGACACAAGAAGCCAAUGCUGUAGUAGCUGGAAGCCUGAACUUUGAAGUCAAUGCCAAUCUGGAGUUCCAAACCUGAAAUACUCCUAAGCUCUAAGCAACAACAUUCUACAUUCUACAAGUUACCAAUUACCAGCAUCUACUGUCUGCAGAAUUAACAGGGUGUGAUUGAUCAGAUCUGUUAACUAUUGCCUUCAGAGUUCAGACACAGGAGAUCAACAUAGACAUAUUCAUAUACUCUUUGCACAUGCAUUUGCUUUUUCACAGAAGAACAGAUAUGAUCCAUGGCAGGUAGAGUGGUUUAAUGAUCUCUGACGACAUGGGAAGAAUCCUAAGUUUGGGCACCAGUUAAGGUUGCCAACCCCUAAUAGCACCUGACUCCACUGCAUCACCAAUGGAGGCAAUACUUGCCACUGCACAUGUUGCAAAAAUGAUAAGCAAAAGUGGAAUUCAUUCAUGACAGAACCAACAUAGUUUCUUGUUGCUUUCAUGCAUCAUGUGCUGGCAAGGCUGGCUUCAUGAAUCUUGGCUAUGUUUUCAUCCUGUCCAAAAAGAAUCUUGAUGAAUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

443

LEP:

90.04%

ME_num:

45

MEP:

9.15%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.99

Avg Expression:

9.41

Tip: OSA-LNCN1437 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-3.114166718606380.0236474470522165
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.83305374469720.0188459851075611
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-2.181760633947580.0406146953043995
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-3.882013152335010.0184899937083559
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-2.484061926278490.0264209636497964
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.707454399121820.0103542298668284
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.61229379198520.00707661301485229