Chr:
Chr11
Start:
5243216
End:
5243982
Strand:
.
Ref_name:
OSA-LNCN1433
Sequence
(OSA-LNCN1433.1):
CAGGCACACAUACACACACGCUGCCCGUACACAGAGAAGACAGAGAGGAGGGGAAUGGAUGAGCGGCUUCUCAUCGGCGGCGACGACGUGCAGGCGUGCAGCGCGUCUUCUCCGGCGGACGGCGCCCCUGUGCUUGGCGUCUCCUCCAUCGGUGACGCGUCGGUGUCUUCUGCGGCGGACGGCACCCCCCCUCCCCCCUCCGGGCCUAGCCUAGUCGUCUAGUCGACUCCUCGUGGUACGAUUUACCGGCGGACACAUCUGGCACAAAGCGCGGAGCGGCGUUUGGUCAUGGGCAAUGCAGGGCCUGCUUGCCUGCCUGUUAGAAGUAUACUCCCUCCGUCUCAAAAUAAGUGCAGUUUUACACUAUUCACGUUCAACGUUUGACCGUCCAUCUUGUUUGAAAAUUUUUUAUGAUUAGUAUUUUUAUUGCUAUUAGAUGAUAAAACAUGAAUAGUACUUUAUGUGUGACUAAAUGUUUUUAAUUUUUUCACAAAUUUUUCAAAUAAGACGGACGGUCAAACGUUUAACGUGAAUAGUGCAAAACUGCACUUAUUUUGGGACGGAUGUAGUAAUAUGUUAGUUAGACAUAAGAGUCAAAAAUAAAUUAUAGAGAUAAAAUAUAUCCUAGACAUAGAAUUCUAGAGAUAGAAUUCUAGAGAUAAAUCUAAUCUUAUUUGUAUUGUACUCCAAGUCUCUAUCUCCUCUGUACUCCUGUAUAUACCCCAUGAGAUGAUCGAUAUAAUAGAUAAGAAAACAACACAAUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.28%
ME_num:
MEP:
6.91%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.3087998158205 | 0.0143870302918681 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 6.45552850940823 | 1.03325517527014e-05 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.46524079921158 | 0.0439171512766563 |