RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1420

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

4166341

End:

4167758

Strand:

-

Ref_name:

OSA-LNCN1420

Sequence
(OSA-LNCN1420.1):

GUUUUGUUUCAGUACCAAAUAUUAUGAACUGAAAUUGUAAUUGAUGGAUUAUAUCAGUUAUUAGGAGUACUAGAGUUUUACAUAGUAUGUGGUAGAACAAUAAGGCUCCUUUGGAAGGUGGAUUUUUUUAAGGAAUAUUGAAGGAACAAUAAGGCUCCUUAAUUGAUAAGUAAGCCUUUAUUGUGAUGUUUACAUUUGUUACUCCACAUGCGAGCUCCAUAUGUACACUUCUGAAAAUGUCAUUCUCUUUUACAUGGCACUCCUAUGUACUAUGUAGCAGUGCUUUCAGUUAGCAGAAUCCAAGAUGCAGUUCAAUGCUCAAGCUUGACUCCCACACUUCAGCGAAGAAGAGCACACGGACUGAAGGAUCAUCAUUAUAAUAUGCCAAGAAACUGAUGUGUUGCUAGGGCGAAGCAUGGCAGCAAAGUUUCGGUCGUCACGAAGACGAAGGCUUAAGGCAAAUCGCUAGACAAAGCCGAAGAUCUUCGCCACGAGUCAAGGACCUUUCACCUCAAAACAAAGGGCUCAGGACCCGAAGGGGCCAACUGGCCUAUGGAGGCCCACUUGGUGGCCCAAGAAGAAGCCCAAAGCUGAAUUACCUACAAUUACCCUCAUAAAUGUUCCUAUUAUAAGGGUAGCCAUGUAAAUUCCCAUGCACUUGAUAACCCUAGGGCACAUGAGUUUGUACUAAGUCUAUAAAUAGGCCCUAAGGGGCAUGUAUUGAGGGAUCCAAAAAAAUUUUAAACAUUAAUACUGCCUUCGUCCCAUAAAAAUUGAAUUUCUACCAUUGAACUUUUGUCCCAUAAAAAUUGUAUUUCUACUAAUAUGGGACCAUUAGUCUUUCUUCCUUCCUUCCCAUCACUAACCCG

Sequence
(OSA-LNCN1420.2):

GUUUUGUUUCAGUACCAAAUAUUAUGAACUGAAAUUGUAAUUGAUGGAUUAUAUCAGUUAUUAGGAGUACUAGAGUUUUACAUAGUAUGUGGUAGAACAAUAAGGCUCCUUUGGAAGGUGGAUUUUUUUAAGGAAUAUUGAAGGAACAAUAAGGCUCCUUAAUUGAUAAGUAAGCCUUUAUUGUGAUGUUUACAUUUGUUACUCCACAUGCGAGCUCCAUAUGUACACUUCUGAAAAUGUCAUUCUCUUUUACAUGGCACUCCUAUGUACUAUGUAGCAGUGCUUUCAGUUAGCAGAAUCCAAGAUGCAGUUCAAUGCUCAAGCUUGACUCCCACACUUCAGCGAAGAAGAGCACACGGACUGAAGGAUCAUCAUUAUAAUAUGCCAAGAAACUGAUGUGAAAUACAUAGAAGUAUGCCAAUUGAUAACCAAUUCUUUGUUCCAAUCCUAAUUGUUGGAGACAUGUCAUGAAGGCAUUCGAUCAAGUCUGCUAAAACCAAUUCACAGUUGCUAGGGCGAAGCAUGGCAGCAAAGUUUCGGUCGUCACGAAGACGAAGGCUUAAGGCAAAUCGCUAGACAAAGCCGAAGAUCUUCGCCACGAGUCAAGGACCUUUCACCUCAAAACAAAGGGCUCAGGACCCGAAGGGGCCAACUGGCCUAUGGAGGCCCACUUGGUGGCCCAAGAAGAAGCCCAAAGCUGAAUUACCUACAAUUACCCUCAUAAAUGUUCCUAUUAUAAGGGUAGCCAUGUAAAUUCCCAUGCACUUGAUAACCCUAGGGCACAUGAGUUUGUACUAAGUCUAUAAAUAGGCCCUAAGGGGCAUGUAUUGAGG

Sequence
(OSA-LNCN1420.3):

GUUUUGUUUCAGUACCAAAUAUUAUGAACUGAAAUUGUAAUUGAUGGAUUAUAUCAGUUAUUAGGAGUACUAGAGUUUUACAUAGUAUGUGGUAGAACAAUAAGGCUCCUUUGGAAGGUGGAUUUUUUUAAGGAAUAUUGAAGGAACAAUAAGGCUCCUUAAUUGAUAAGUAAGCCUUUAUUGUGAUGUUUACAUUUGUUACUCCACAUGCGAGCUCCAUAUGUACACUUCUGAAAAUGUCAUUCUCUUUUACAUGGCACUCCUAUGUACUAUGUAGCAGUGCUUUCAGUUAGCAGAAUCCAAGAUGCAGUUCAAUGCUCAAGCUUGACUCCCACACUUCAGCGAAGAAGAGCACACGGACUGAAGGAUCAUCAUUAUAAUAUGCCAAGAAACUGAUGUGGUAGGACAUUGAAUGCCCACUGUUGUUUUUCUUCACACCACGCUUUGGAACUAGUUCCCACAAUAAGAGCAAGUUUAAUGUUGCUAGGGCGAAGCAUGGCAGCAAAGUUUCGGUCGUCACGAAGACGAAGGCUUAAGGCAAAUCGCUAGACAAAGCCGAAGAUCUUCGCCACGAGUCAAGGACCUUUCACCUCAAAACAAAGGGCUCAGGACCCGAAGGGGCCAACUGGCCUAUGGAGGCCCACUUGGUGGCCCAAGAAGAAGCCCAAAGCUGAAUUACCUACAAUUACCCUCAUAAAUGUUCCUAUUAUAAGGGUAGCCAUGUAAAUUCCCAUGCACUUGAUAACCCUAGGGCACAUGAGUUUGUACUAAGUCUAUAAAUAGGCCCUAAGGGGCAUGUAUUGAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

471

LEP:

95.73%

ME_num:

16

MEP:

3.25%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.97

Avg Expression:

0.93

Tip: OSA-LNCN1420 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h-4.209173294636420.00759503137056524
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)-1.764712205056540.00343229473701588