Chr:
Chr11
Start:
3465871
End:
3467831
Strand:
-
Ref_name:
OSA-LNCN1417
Sequence
(OSA-LNCN1417.1):
UAUAUAUAUAGACACACACAUAUCUCAUAUAGCAUUAUAUUACUGUUUCAACCAACAUUUUCUUUUAUUUUCUUCUUCUUUCGAUAUAAUUUAUGUUACAUAUGUUGAGAACAGAUCAUGUCAGAGGGGGCAAGCUAGUAUUGCAAGUUUCAUUUUCAGAAAGCAAAUAAUUUCAAAUUCGAUCAGAUAAAUUUAUUAAUAGAUUUAAUUAAAUACAAUGACAAUCACGCACAUUCUAACUUAACUGAUCCAUUGUUCCUGUAAUUAUUUAAAUUGCAUGUUACUCCAAGUUUAUAUGAUAUUUAUAUGAAAUUUUUUAUGGUGCUCCAAGUUUGUUUAAUUUAGACCGUCUAUAUAUUAGGAUAUAUGUUCAACUGAAUCAAAUUAAGAGGAGGCUAUUAGUCAUACGAACUAGCUAGGUAAAUUUGCUGUUAUGGGAUCUCAAUCCAAGAAUUUGCUGCUAUGGAAGAGAGAAUAGAGGAGAGGGAAACAUCGAUCUUAUCUUAACAUUCGCUUGAGAUUGGCUCUUACCUUCUAUGAAAAGAUUUUUUUUAUUGCAUGAAGUUAGGAGGAAAAAAGGAAAGAAAAGUAAUAAUGUCCCUAAAAAUAUUUUGAAGGGUUUAUAUUUAGAGUCUUUACUAUCUUUAACUGUUGCUAGAUGAUUAUCUCUAAAUGACAUGUAUUACCUAGCUAAGAGAAUUUAUCCCACUUUAACUUAUGGCAUAUGCGCUCAAAGUAGAGUCCGAUAUAUAUUCUCUUUUUUAAUAGUGGAUUAUUCCUUUUCUUUUGCAAAGAUUAAAGAAGUAAAAAAAUAUACAGGUGAUCGUACAAAAGGUGACAGGAGAAAGAAUAAAUACAAAAUUUAUUAGAUUACCUCGCCGUACGGAUGCUGGUCAGCGCAACUACAAAUCAUCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.4%
ME_num:
MEP:
18.29%
HE_num:
HEP:
19.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.94
Avg Expression:
34.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.0211908703638 | 5.09727888458444e-15 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.22600420178565 | 0.0182054237627047 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -4.02930805215723 | 0.000454159038770717 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -3.27344705378114 | 0.00952878982192386 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -4.09305282443191 | 5.51430873179405e-05 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -3.03223645433746 | 0.00051616396611194 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.7201834694383 | 0.0029035067137276 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -6.53481186732669 | 4.1612151491693e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -3.53377465673323 | 6.03994465334767e-06 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -3.79760929781728 | 0.000487736489340685 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -3.03215723527625 | 0.00619211481086014 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -3.23484601621405 | 6.32126245476501e-05 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.60303388004772 | 0.00175322147166287 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -4.12539730790662 | 0.0147455413849103 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.21619780312298 | 6.4657567749161e-15 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.73464352725029 | 0.0279665199783149 |