Chr:
Chr11
Start:
3329701
End:
3330377
Strand:
+
Ref_name:
OSA-LNCN1414
Sequence
(OSA-LNCN1414.1):
CCGCGCUCGCCUCUGCCUCGCCGUCGCGCUCGCCUCUUCACCGCUCUCGCCUCUCCGCCGCGCUCGCCGCUGCCUCGCCGCCGUGCUCGCCUCUCCGCAUCCGCCAUCGCCUGGAGAAGUGAGAGAGAGAAGUGAGAGAGAGAGAGAGAGAGUAGAGAGAGGAGAGAGUAGUGUAAGACAAGUGGGUCCCACAUUUUUUUAUAAAGAGAAUGUUGACUGGACUGCCACGUGUACGCCACGUAGACCAAAACUACCGCGGAUUGGGUCGAGGGGGUAAUUCGUCCGGUAUUUAUAGUUGGGGGUGAAGAAUGUCCGGUUUUAUGGUUCGGGGGGGUAAUUCGGAUGACCGCGAUAGUUCGGGGGGGUAAUUCGUACUUUUUCCAUUCUGGUUUGAUAUGUUGGUGAAUGGUAAUUUUUUGGGUUGAUAUAUUGCCGAAUGCUCAUAUUCUGGUUUGAUAUGUUGGUGAAUGGUAAUUUUUUGGGUUGAUAUAUUGCUGAAUGGUCAUUUUCUGGGUUGAUAUGUUGCUGAAUUCUGAAUUUUUUUAUUAGAUAUAUUGCUGAAUGGUUAUUUUCUGAGUUGAUAUAUUGUUGCAUGCAUAUUUUAUUAAUAUAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.98%
ME_num:
MEP:
26.42%
HE_num:
HEP:
24.39%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.91
Avg Expression:
22.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.28200841743861 | 0.000240564683438925 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.79983928964076 | 0.000195710876681119 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.41464599608287 | 0.0114404523702077 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.79145616243601 | 0.0399954044874466 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.84708146999155 | 8.44759943488135e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.22510061455967 | 0.021562341335175 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.36607295504158 | 0.00384747500284676 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.3956162998165 | 0.0434713335779966 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.98066358051074 | 3.35970582340974e-12 |