Chr:
Chr11
Start:
2971460
End:
2979030
Strand:
-
Ref_name:
OSA-LNCN1403
Sequence
(OSA-LNCN1403.1):
GUUCCUUACUUUCCUGUGAAAUAGACAUGAAUUUACAUGCAUUCAGGUGUAAAAUAGUUUGUGCUCAACCUUCCAAGAGGAAGAUAUUUUUCAAUGUGCUUACAAACAGUACCAUUUGUAGUGAGGUUGACAGUGUUUACACCCCAGGUAAAUUCCUUGUAACAUAGUAAGUGGCAACUCACUAAGUUGUUCUCGCCGCCUUAUCAAGAGCGAAGGACUAAUGGAAUGAUGGGUUUAAAUCAUUUAAUUAAGCAAAAGUGGCUACUAUACCAUACUACUAUCCAGCCGAAGAAGAUGAACAUUGCCAAUAGAAAAAAAAACUGACAAAUCCUGACUCAAUUGUAUACUUUCUAGAGGGAUUAGUUCAAGCAGAUUAAACCAUAAUGACCAGCAUGAUCGUAGCCAAAGAAGAUGAACAUUGCCAAUCAGAUUAGUUGUAGAUCUCGCACGAAACUGUACACAAGCUAUCUAUCGAUACUAUCACCAGAUUAGUUGCAAAAUCCCGAUGCAUGCACACAGCCAGAUCCAAAGCUCUAAAGGUGUCGACUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.39%
ME_num:
MEP:
64.43%
HE_num:
HEP:
10.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.60
Avg Expression:
3.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.35406337792491 | 2.65063891113228e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.30381366623654 | 2.22385487418482e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.42728804469258 | 7.06687706653066e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.13787968491783 | 0.000600779226337952 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.39951489102512 | 2.99531637729891e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.70642322847322 | 0.00331443253290999 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.41608515354975 | 6.4422758020497e-06 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.29521540980103 | 0.0437992428917682 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.30804955528929 | 0.016171925676333 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.1547985293205 | 0.0391118672032198 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.30549236639126 | 1.32390066648264e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.21480401078445 | 2.14515709788253e-05 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.96394802536388 | 0.0275650650566792 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.96401899055959 | 0.0280732772216983 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.96414521617963 | 0.0276203445311861 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.59929126788231 | 0.000156523451627996 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.60924444137185 | 0.0139042328281095 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.20669815671905 | 7.49934366430197e-05 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.31231188813076 | 0.0078843366329333 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.69385023088769 | 0.000517782573199385 |