Chr:
Chr11
Start:
2839580
End:
2840865
Strand:
+
Ref_name:
OSA-LNCN1400
Sequence
(OSA-LNCN1400.1):
UGCAAUUAGGGUGUAGGACCAGCCAGCAAUGGUGACAAACACUACAAGUACAAGUACAGCCAGACAUGAUCGUACGUUCAGCUAGCUGCAACUGCAACUUGCAUAUAUGACUGUCUCAAGCUAUUGUACUACGCUCUGCCUAUUUCUUCUUCACAGAUGCAACUAAGGUUCGCACAGUAUAGUGCUAUACUCCCUCUCUACCCAAAAAAAAAAUCAAUCUUGUGGAUGUAUCUGAACAUGCAUCUUGUUCAGAUACAUUCUCGGGGUUGUUUUUUUUUUGUUUUGUUUUUUUUUUACUACAAAGAGAGUAUAUGUUACCUCAGUUUCCAAAUAUACUUAUGGUCGUUUAGCAAUUACUGUCUCAACUUUUACCGUAAGGUACUCUAAAUUAUUUAGUAGAUUAUAUGAUCGAAAAUUCAUUAUAAUUUAGUCUCUCAUUAUCUACUCGUUAACUUAUCAGCUAGUAUAUAACCAAAAUUUAAAUUCCAAAACUUAAUUCUACGGUUGAUCUAGGGUUUCUAUUUCUAGUCUAUCUUCUAGCACUUGAUUUUAAAUCGGUAAUAACACAUAUAUAUAAAAGUUUUAUCCCCUAAAUUAUUUUCCGUUGCUUCAUUCAUUCUUCUAUGGCUUAUCAAUCGUCAUAACUCAAACAAUCGCGUAGCUUUGUAUGCACGCAUGCACGGAUGUCCUAUCCCCAUCCCAUAAUAUAUGCCAACGUCAAACAAAAAGAAAUAGAGGGAGUAUAUAUAUGUCGAGAUUGAUGAGAGCAGGGGCGGAGCCACUGCUCGGCCAGGCGAGCGGGCAAAAACUCCAUUAAAUUUUUUUUUAUCAGAAAACUCCAUUAAAUUUUAAUAUUAUGAUGAAAUUUCUAUAGCAAAUACUAAUUGUAUUAAAGUUUGUCCGGGCUCAAAAAUCUUUCUGGCUCCACCACCGGAUAAGAGCUCGGGUUUUAAUCCAUUAUCUUAAAAGAAGAAAAAUAGAAAUACUAGAAGAGAGAUGAGAUGCAACAUAUACUCCCUCAUUCCCUAAAUGGAUGGAGCUAGGGAGUAUAAUGCAAAUGGAAGAAUGAUGGAUGAGAUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.42%
ME_num:
MEP:
58.54%
HE_num:
HEP:
14.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.63
Avg Expression:
4.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.58197924939614 | 7.82466171618032e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.90608187179175 | 3.02708527923806e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.46389247886911 | 0.000488392181038232 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.06060716430407 | 1.36607361142797e-09 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.1859788314576 | 1.44859833230375e-05 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.30130588571249 | 2.18506695171545e-05 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.21473154959333 | 0.0173510964263488 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.19544844094718 | 0.00248421984491757 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.89464504884239 | 2.02803742625542e-09 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.09573532481141 | 7.60740118926478e-12 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.02373364640829 | 0.00315612537619604 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.85951306047338 | 7.54655783342071e-06 |