Chr:
Chr11
Start:
2662782
End:
2666715
Strand:
-
Ref_name:
OSA-LNCN1399
Sequence
(OSA-LNCN1399.1):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCAUGGCGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGAGAAGUCCAGAGGCAAAUUUCUUCAGUUCUGAUCAUCCUGAAGCGCAUGGCAUGCCUGAAUUGCUGCAAUUCAUACGACAUGAGGGAGCACUAUUAUAUUCAGGGCCAUGAUCUGAUCGAUACUGGACUAGUGGUAGGUUUCUGAAUUUCAAAUUGAAGUUUGAGGUCGACGGUCUUAAAUGCAGCGGCAACGAAACCAAUGCUGCUGUUGGCGGGCGAAUUACGAAAUUCAGG
Sequence
(OSA-LNCN1399.2):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCAUGGCGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGAUUAGCCUGUGACACUGUGGGCGCUUCUUGUUUGGCCAAGCUUGUGACACCAUCUGUUCUUGUCACGGCUGACGUGUCGUCGUGCACGUCGGUCUCCAGAAGACUGAAAACAAAAAAACAUGAUCACGUAUUCUCAGGUCUCUUCCCUUGUUUGCUUAAUUGGUUCAUUCUGAUGUAAGAAGAUAUAUCUUGUUAAAAAUGCUUAUCGAUC
Sequence
(OSA-LNCN1399.3):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCAUGGCGCCGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGGUGAAGUUACCGGGCGGUGAUAUGAUAUGAUAGAAUCUCUCCAACGGCAAAAGUAAUUAAAAUGGCUCCUAGUACUACUACUGUACAACAAAAGCUAUUUAAAAUUUGAUGAAAAUUUAAGUAAAGUUGGCUGGUACUAGUAGUAGUACAGGUGCUUGAUUUAAUUUCUGUACUUUAUGCAGUUCAUGUUGGGUAAUUAGUCUCUGUUUAGUACUCGUAGUACGUGUGUUAAUCUCGUUUUGUUUAGGAGGUUAAUUGGAAUAGUUAGUUAGUUAAUUGGAUGUGUUUGUGUGUGUGUAUGGCCUUUGGUUUUGCAUGAAGGUCCAUAGAGAAUUAAGGCAAACAGCUAUAGUCAGUUAUUGUUACAAGUACGUGCUUUAAUUAUGUAAUUAAAUAUGUGAUUGAUCAAUGAGGAAUUUAAUUAGGAGUGUGAAUUGGAUG
Sequence
(OSA-LNCN1399.4):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGGUGAAGUUACCGGGCGGUGAUAUGAUAUGAUAGAAUCUCUCCAACGGCAAAAGUAAUUAAAAUGGCUCCUAGUACUACUACUGUACAACAAAAGCUAUUUAAAAUUUGAUGAAAAUUUAAGUAAAGUUGGCUGGUACUAGUAGUAGUACAGGUGCUUGAUUUAAUUUCUGUACUUUAUGCAGUUCAUGUUGGGUAAUUAGUCUCUGUUUAGUACUCGUAGUACGUGUGUUAAUCUCGUUUUGUUUAGGAGGUUAAUUGGAAUAGUUAGUUAGUUAAUUGGAUGUGUUUGUGUGUGUGUAUGGCCUUUGGUUUUGCAUGAAGGUCCAUAGAGAAUUAAGGCAAACAGCUAUAGUCAGUUAUUGUUACAAGUACGUGCUUUAAUUAUGUAAUUAAAUAUGUGAUUGAUCAAUGAGGAAUUUAAUUAGGAGUGUGAAUU
Sequence
(OSA-LNCN1399.5):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCAUGCCGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGGUGAAGUUACCGGGCGGUGAUAUGAUAUGAUAGAAUCUCUCCAACGGCAAAAGUAAUUAAAAUGGCUCCUAGUACUACUACUGUACAACAAAAGCUAUUUAAAAUUUGAUGAAAAUUUAAGUAAAGUUGGCUGGUACUAGUAGUAGUACAGGUGCUUGAUUUAAUUUCUGUACUUUAUGCAGUUCAUGUUGGGUAAUUAGUCUCUGUUUAGUACUCGUAGUACGUGUGUUAAUCUCGUUUUGUUUAGGAGGUUAAUUGGAAUAGUUAGUUAGUUAAUUGGAUGUGUUUGUGUGUGUGUAUGGCCUUUGGUUUUGCAUGAAGGUCCAUAGAGAAUUAAGGCAAACAGCUAUAGUCAGUUAUUGUUACAAGUACGUGCUUUAAUUAUGUAAUUAAAUAUGUGAUUGAUCAAUGAGGAAUUUAAUUAGGAGUGUG
Sequence
(OSA-LNCN1399.6):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCAUGCCGCCGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGGUGAAGUUACCGGGCGGUGAUAUGAUAUGAUAGAAUCUCUCCAACGGCAAAAGUAAUUAAAAUGGCUCCUAGUACUACUACUGUACAACAAAAGCUAUUUAAAAUUUGAUGAAAAUUUAAGUAAAGUUGGCUGGUACUAGUAGUAGUACAGGUGCUUGAUUUAAUUUCUGUACUUUAUGCAGUUCAUGUUGGGUAAUUAGUCUCUGUUUAGUACUCGUAGUACGUGUGUUAAUCUCGUUUUGUUUAGGAGGUUAAUUGGAAUAGUUAGUUAGUUAAUUGGAUGUGUUUGUGUGUGUGUAUGGCCUUUGGUUUUGCAUGAAGGUCCAUAGAGAAUUAAGGCAAACAGCUAUAGUCAGUUAUUGUUACAAGUACGUGCUUUAAUUAUGUAAUUAAAUAUGUGAUUGAUCAAUGAGGAAUUUAAUUAGGAGUGUG
Sequence
(OSA-LNCN1399.7):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCAUGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGGUGAAGUUACCGGGCGGUGAUAUGAUAUGAUAGAAUCUCUCCAACGGCAAAAGUAAUUAAAAUGGCUCCUAGUACUACUACUGUACAACAAAAGCUAUUUAAAAUUUGAUGAAAAUUUAAGUAAAGUUGGCUGGUACUAGUAGUAGUACAGGUGCUUGAUUUAAUUUCUGUACUUUAUGCAGUUCAUGUUGGGUAAUUAGUCUCUGUUUAGUACUCGUAGUACGUGUGUUAAUCUCGUUUUGUUUAGGAGGUUAAUUGGAAUAGUUAGUUAGUUAAUUGGAUGUGUUUGUGUGUGUGUAUGGCCUUUGGUUUUGCAUGAAGGUCCAUAGAGAAUUAAGGCAAACAGCUAUAGUCAGUUAUUGUUACAAGUACGUGCUUUAAUUAUGUAAUUAAAUAUGUGAUUGAUCAAUGAGGAAUUUAAUUAG
Sequence
(OSA-LNCN1399.8):
GUCAACUCAUGCAAUGCAAUGCAAAAUGGUGAGUUGAUGAGCAACCCUUACCAAGCUAAGGCCACACAUGGCCCAACCACUAAUCAAAGUCUAGCUAAUUAAUCCAGCUUACUUAAUUAACCUAAUUAAUCACCCUAGCCUUAAUCAAACCAAGCAUAAAUAGCUAAGCAGCUGGGCGCAAAAGCUAGCUUGCUUGGCCACUGCUCGUCUCUUGUCCACCACGAGAUCGACGAACACCAUCGAUCGCAGCUUCGCGUAGCUUUGAUUGGUGCACGUGUUCGAGCUCGAGAUGUCCACGUCCGCCGCCGCCGUACGGCGGCCAUCACCGGCGCAGCUAGCUGAUCAGUCAACCAUGCAUCGGAUGCCACGUCAUCAGGUGAAGUUACCGGGCGGUGAUAUGAUAUGAUAGAAUCUCUCCAACGGCAAAAGUAAUUAAAAUGGCUCCUAGUACUACUACUGUACAACAAAAGCUAUUUAAAAUUUGAUGAAAAUUUAAGUAAAGUUGGCUGGUACUAGUAGUAGUACAGGUGCUUGAUUUAAUUUCUGUACUUUAUGCAGUUCAUGUUGGGUAAUUAGUCUCUGUUUAGUACUCGUAGUACGUGUGUUAAUCUCGUUUUGUUUAGGAGGUUAAUUGGAAUAGUUAGUUAGUUAAUUGGAUGUGUUUGUGUGUGUGUAUGGCCUUUGGUUUUGCAUGAAGGUCCAUAGAGAAUUAAGGCAAACAGCUAUAGUCAGUUAUUGUUACAAGUACGUGCUUUAAUUAUGUAAUUAAAUAUGUGAUUGAUCAAUGAGGAAUUUAAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.44%
ME_num:
MEP:
20.73%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.94
Avg Expression:
5.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.46936108636378 | 0.000147192150716258 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.25521826734079 | 0.00350743163549045 |