Chr:
Chr11
Start:
2492484
End:
2493504
Strand:
+
Ref_name:
OSA-LNCN1396
Sequence
(OSA-LNCN1396.1):
CUCGGAAUCAAAAGGGCCUUUAGCAUGAUAAAUUAGUAAUAGUACUUGACAUAUCACACUCAGAGCUUGUUUGGCAUAGCUCCAACUCCAGCUCCACCUGUUAUGAAUCUAGAGCUCAGCUAAACAAUUUCAACUCCACCUAAAAUAGGAGUGGAGCUCUUUCACAAAAUAAACCAGAGAAGUAGAGCUAGGUUUAGUCUGCUCCACAACUCACUCCAGAUCCAACUCUUGAAUCUAAAUUUAGGAGUUAAAUCUCUACCAAAUAGACCCUCGCUCUGCCAAGCCACCCAUGAACAGUGUUUUUCUAAAUAUGUACUACUACUACUUGCAGCUGGUCUAUUGAACCAUGCUCAGGUGAAGAGGUAGGGAGGGAGACAGCAUCAAGUAUAAUACGGGGAUGCAGGCAUGCAGCAGCCGACCAGCCACCCCGAAAUCCCGCGGUUUCGGACUUUUUUGACCCUUGGACUCUGCACUUUGCUCCGUUUUACAGUGCUGCUCCCGCUUCCCCGCAACUCAACCUCUUUCUUUGCUCUCCUCAAACCGAACCUUCUCUGCCAUCGUCUUCCUCUUUUCAGAAACUGUCUCUCUUCUACUGCUGAUGAAGCUGAUCAUCACAAUCUUGCUUUGCUAUGAUCAGAGCAAGUUCUCGUCAGGUUUAAUUUCAGGUGGUCAAACAAUUGCAGUAUGAGCAGUAGUAGUUUGUAUUACUGUCACUGUCAGCGCCAUAUCUUUCUUGAUCUUACAGGCAAGCAAAAGCUCUGUAGAGAGUUUUAGCUUACUGUUCUGAUCGCGAUCGUUCGCUGUGUGCAGUUGAUUGCCCAUCACGUCUGCUGAUACUACACUCUGACUUCCAUGCACAUAUGACUGCUACUAGUAAUCCAGGCAAUCCAGCUGGUAUCAAGCAGGAUCACUGCCUCUGACGACA
Sequence
(OSA-LNCN1396.2):
GGCCUUUAGCAUGAUAAAUUAGUAAUAGUACUUGACAUAUCACACUCAGAGCUUGUUUGGCAUAGCUCCAACUCCAGCUCCACCUGUUAUGAAUCUAGAGCUCAGCUAAACAAUUUCAACUCCACCUAAAAUAGGAGUGGAGCUCUUUCACAAAAUAAACCAGAGAAGUAGAGCUAGGUUUAGUCUGCUCCACAACUCACUCCAGAUCCAACUCUUGAAUCUAAAUUUAGGAGUUAAAUCUCUACCAAAUAGACCCUCGCUCUGCCAAGCCACCCAUGAACAGUGUUUUUCUAAAUAUGUACUACUACUACUUGCAGCUGGUCUAUUGAACCAUGCUCAGGUGAAGAGGUAGGGAGGGAGACAGCAUCAAGUAUAAUACGGGUAUUUGGUUUACCUUGAGACUAACGACAGGUUUUGGGAGACGUUUCUAGCUGCUGUUGCCCAGUUUUCCAAGCUAAUACUAGUGCAGUCGUGCAGGGAUGCAGGCAUGCAGCAGCCGACCAGCCACCCCGAAAUCCCGCGGUUUCGGACUUUUUUGACCCUUGGACUCUGCACUUUGCUCCGUUUUACAGUGCUGCUCCCGCUUCCCCGCAACUCAACCUCUUUCUUUGCUCUCCUCAAACCGAACCUUCUCUGCCAUCGUCUUCCUCUUUUCAGAAACUGUCUCUCUUCUACUGCUGAUGAAGCUGAUCAUCACAAUCUUGCUUUGCUAUGAUCAGAGCAAGUUCUCGUCAGGUUUAAUUUCAGGUGGUCAAACAAUUGCAGUAUGAGCAGUAGUAGUUUGUAUUACUGUCACUGUCAGCGCCAUAUCUUUCUUGAUCUUACAGGCAAGCAAAAGCUCUGUAGAGAGUUUUAGCUUACUGUUCUGAUCGCGAUCGUUCGCUGUGUGCAGUUGAUUGCCCAUCACGUCUGCUGAUACUACACUCUGACUUCCAUGCACAUAUGACUGCUACUAGUAAUCCAGGCAAUCCAGCUGGUAUCAAGCAGGAUCACUGCCUCUGACGACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.73%
ME_num:
MEP:
3.66%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.93937560246575 | 0.0143494497181389 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.12856198105236 | 0.0320576031081234 |
3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.8466963917108 | 8.83751912153826e-05 |