Chr:
Chr11
Start:
474608
End:
476477
Strand:
+
Ref_name:
OSA-LNCN1355
Sequence
(OSA-LNCN1355.1):
CAUGUGUUCAACGGGGGAGAAUGAGCAAUUCGAGAAAUCAAAGCGCCGCUUCCAGCUGCCCGCCCGCCGCCUCCAUGUCCUCUUGAAUCCGAGGCUGAAGCUAACGCCGCCGCGAGACCUCGAGGAGGGAGAAGGAUGUUGACGGUCUCCGCUCUCCGGCGCGGCGGCCUGCAGGGGAGGAGAUUGGGGAUCAGGAUCCUCUAUCACUGACAUUUGGGCCCACAUGUCAGUGACAAAAGCUCCGUGCAUUACCAGAUUGGCUGGUGUUUAAUUCCAACGGAUAACCUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.62%
ME_num:
MEP:
83.54%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.74
Avg Expression:
3.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.07024629517797 | 0.00150658021538304 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.022983572245 | 0.000561271297801438 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.07271520205621 | 1.27883477435692e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.6899798534679 | 0.000296662353008529 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.94062889611472 | 9.02797813205193e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.4453453692263 | 3.68212439424113e-05 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.84764169134143 | 1.67698045923053e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.09491686974633 | 5.93798579016758e-10 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.55099413912784 | 8.74235953022936e-08 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.57236993422368 | 0.00243513007764951 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.55323574972682 | 0.00491047282915059 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.30844007846395 | 6.45430882380757e-05 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.02399467529404 | 0.0258845538711562 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.17552164807172 | 3.1984138859642e-07 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.20317477767375 | 6.18527226953275e-14 |