Chr:
Chr11
Start:
249877
End:
265734
Strand:
-
Ref_name:
OSA-LNCN1347
Sequence
(OSA-LNCN1347.1):
GGAGCUUUGCUUAUCAUUACCCUCUUCUGGACGCACCUGCAAAAUCUGAAAUACUAAUAAGCUAAUAACACACUUAGAAAAAGUUCUGAUUUUCCUUUUUGGUGUUUUUGGAGGAAUCUGGAGGUUCACCUCUGCUGCACCUAGAGAAAAUCAUUGUGCAUGUAUUCAGGCCUGUAAUCUCCAUGGAAUGGAAGUAUGUUUCGAGGGAAAACAAAAAGCGCUGGCAGCUUGCACACAACCACCAUAUAUACAGAAUAGACAUUUAGUUUGGAGUGUAGACAGCUCUCUGUUUCUUUUCAGCUCUGCAGGGCAGCUACUUACUAGUCAGUAGUCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
42.28%
HE_num:
HEP:
57.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.76
Avg Expression:
30.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.50988988106479 | 0.0331275108687302 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.64309946112737 | 0.00108503358279297 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.54324524416585 | 4.54599001909212e-24 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 4.49771820165365 | 5.99887693559689e-20 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.23075195008516 | 9.38010434008458e-12 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.98268946327026 | 4.92852048528463e-07 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.33018915847295 | 0.0381117668805211 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.05344070700617 | 1.07641049565273e-07 |