Chr:
Chr10
Start:
23008537
End:
23012009
Strand:
-
Ref_name:
OSA-LNCN1339
Sequence
(OSA-LNCN1339.1):
CUAAAGCCUUUCAACGCGCAGCCACCGCACCAACGUCUCGCUGUUGGCCGGCCAUCAAAGCAGGAUUUCAACCUCCGACGCACACUAGAUCCAUCCAUGUAAACGGGUUGGAGAGGGAGAGGGUGAGAGAAAAAUAUGGAUACCCUCUUCUCCGCACUUGCCAGCAUAGCGUUGCCAUCUGGUGGCGGCAAGGCGCCACUGAAAGAGGACAAACGCCUGGAGAGGAACUUGUCGUAGUCUUCAAAGCCCACCUCAUGGCGCUACUCGUCGUCGCCUCGGCCAGGCUGCCGUGUCAUCCGCAGCAGGUUGCUUGGUCGCAUUGCUGUCGACUUUGCCGUCCUCCCACAACGGCGGUCUCGUCGCCACAUUGGUCAUGUCGCCCUGGUCGCCUCCACACUGCACUCGCCAACACGAGCCACCCUGUCGCGCUCGCUGGCCACUCAUGUCCCAGCGCCGCCGACACCUUCAUUGCAGGCCAUCGCACGGGGCUCCUGUUGCCAUCGACGCCGCUCACACCGACCACGGCGUCAUGCUGGUGUUGACGCUGCUAGCUCUGUCGCGCCGUCCACAGCCUCGCGUCAUGCGGCGUGUCGUCCCCGCCCCCGUCUUGCACCACCGCCCGCACCGGCUGCUCCCUAGCCAGUUCUGAGCGAGGGCGCCAGAUUUGGUUGUGGGGGGACCGGAUUCGCUGCCCCCAUGCGGGAGAAGCUGUCGCUGCCCUCUGACUUCCAAGCUUCGCCUCCUCCUCCCUGCGCCAAAGGUUUGGCCCUGCCGCCGUCAUCCUUGCUCGCUGCCCGGUUCUCCUAGCGGCACACUACGGCGACGGCGAGACGGAGAUGAGGAGCUAUACUAGUCUACUGCUACUCCAGACUCCAGGCCUCCGCCUUUCCGGCCGGCUGAUUGCUUUUGUGUUUCCUGCAAGACAAGCCAUAUUUCUUGUUGUUUGUGUGUGUGGCUCCCUCCUCUCCAGGCGCCACAGAAUUGUACAGUACACUUUGUUGAGUUGGCGUGUUGCAGGCCACGGACAUGGCCGUCACGUCGCCUCACCUCGCUAGCUUCGUACUAGUGUACUGUAGCACUAGUACCUACAUAAAAAGCCAUCCAUCCUUUCCUGCAUGGAGUAGGAUCAGGCAGCAGGAAGGAACGGAGGACGUUUCAGUUUGGAGCAGCAUUCGUUUUCGUUUCCUUUCCUUUGUGCUUUCUUGUGAUCCACAGAAUACUGAACGGAUAUGAUUCUCUCACUCCGAUCCUAGCUUUGUGGGGGAGGGGAGGCUGCAUUGCAUGCGCGCGUAUAUGUAUGUCGUGGUCGAUCGUCCUUCCAGUUCCAUGUGGAGUAGGAGGAGUAUUUAUCUCUGGGAUUCGAUUCAUGUAUAUAUGAUGAACAGAGCUCAAUCGAUAUAGAUCGCUAGCUAAGAAUCGAUCCAGAAUAUACUGGACUACUCCACUAUAGUGGUAGGUACUAAAAGUACUUGAUACAUAUGCUUCCAUUCCUUUUGCUUUUGCUUUUCUACUUGCAUUGCUGGCCGCCUACCUAAGCUUGUGGCACCAAAUAACCCAGCCUCACGCUCCAAGGAUAUUAAUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.91%
ME_num:
MEP:
44.31%
HE_num:
HEP:
23.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
8.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.48918428933731 | 0.000116419884570496 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.14626932157792 | 0.00946181506557063 |
3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.79799625727732 | 0.00374514242702429 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.99244402595781 | 0.000224358182254845 |
5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.84348066390788 | 0.0163026172217716 |
6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.19584959492351 | 0.030488891794046 |