Chr:
Chr10
Start:
22778396
End:
22779537
Strand:
+
Ref_name:
OSA-LNCN1335
Sequence
(OSA-LNCN1335.1):
UUUUACUGUUAUAAAAUUCUUCAGGUAGGAGAUAUCAAAAAACAUAAGAGCUGCACUUAAAAGCAAAUAAAAUACACAUGAUAUGGUUUUUGAAUGUGCCGACUGCACAACUGUAUGACGACUUGUAACCGAAAUAAGUAUUGUGUUGCAACAGCUCACAAUAUUGAUUUGAUAGAGCAACCAUCUAUGGUUCUUAACAUAUUUAGAAGUAUGCUUGUGAUAAAAAGGACAGUUGUUCAGAAAACGCAGUCUGAUGUCAUUUGUCUAGAGAAUUGAGACUCAAAACUCAUAUAUCCCUUUCAAGGACAUACACAAGAUAGAAUAGGAGUAAAAGGCAUGUUUUUGACUGUUAAAUUAUUCAAUUUGUUGUUUUACAUCUCCCUUCCAAGGAGAUAUCACAAAACAUAAGAACACUUAAAAAAACCUAUAAAGCACAAGGAUCAGUGUUUGAAUGAGCCUACUGCACAAGUUUACGACGACUCGCAACCUAAAUAAGUUACUGCACUGCGGCAGUUCACAACAUUGAUUUGAUUUUACAGCAUUUAACAUAUGUAUAUGGUUGUUCAACAGGAAGGGUGUGGUGUCAUUUUCUCUGGAGAACUGAGGCGCAAAACUCAUAUAUCCCUAUCAAGUAGAAAUCAGAAAACACAAGAAACCUACAAAAGAGCAUAUAAAGCACAAGGGUCUUUAUUCCCUUUGAAUAUGCACACUGCAGAAGUGUAUCGCUCGCUGCUGAAGGGAGGGGGGGGGGGGGGGGGGAGCACUGCAAGUCUGCACUGAACAGACCUGUUUCAGGAAAGGGCAAUUUCAGAGAAGCUCAUUACCAGGGGAUUCCUAUUGAUCUAUUGUACAGACGAUGAUGCAAAGCUCAGGCACCCUCAGAGUGAAAAUGAACAGUGCAGUCACCACCAGAUGAAAGGAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.51%
ME_num:
MEP:
49.59%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.87
Avg Expression:
7.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.09888743613676 | 0.00273735535606704 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.24247740245587 | 0.000935644562970364 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.43461298230302 | 0.00024898611331438 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.41967562843813 | 2.537411399534e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.14102155275398 | 2.86286819491742e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.56025293183371 | 1.8403401762503e-12 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.66421339024924 | 5.4779976378036e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.08655858183081 | 0.00147454802652408 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.57352867095154 | 0.0375986570494308 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.5383916301448 | 0.0150727199367293 |